MDP0000278334 (Malus domestica)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 MDP0000278334 T247110_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.818 0.818
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.818 0.818
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000278334 LOB 80 178

Links

Other LOB family TFs
Other Malus domestica TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.970
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.970
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.970
TCM_045438 Theobroma cacao TCM_045438 I 0.960
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.960
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.960
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.960
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.960
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.960
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.949
PK17217.1 Cannabis sativa PK17217.1 I 0.949
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.949
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.949
MDP0000167580 Malus domestica MDP0000167580 I 0.940
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.939
Ca_04126 Cicer arietinum Ca_04126 I 0.939
29729.m002335 Ricinus communis 29729.m002335 I 0.939
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.939
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.939
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.929
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.929
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.929
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.929
LBD15 Arabidopsis thaliana AT2G40470 I 0.929
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.929
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.929
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.929
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.919
Bo3g034980 Brassica oleracea Bo3g034980 I 0.919
Bra000188 Brassica rapa Bra000188 I 0.919
Bo4g012620 Brassica oleracea Bo4g012620 I 0.919
Bra004572 Brassica rapa Bra004572 I 0.919
Bo4g190210 Brassica oleracea Bo4g190210 I 0.919
PK21617.1 Cannabis sativa PK21617.1 I 0.913
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.909
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.909
Cla007391 Citrullus lanatus Cla007391 I 0.909
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.909
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.909
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.909
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.909
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.909
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.899
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.899
Bra016992 Brassica rapa Bra016992 I 0.899
Ca_12420 Cicer arietinum Ca_12420 I 0.899
TCM_042262 Theobroma cacao TCM_042262 I 0.889
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.889
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.889
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.889
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.889
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.889
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.882
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.879
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.879
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.879
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.879
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.879
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.879
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.879
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.879
mgf011471m Mimulus guttatus mgf011471m I 0.879
OB05G14280 Oryza brachyantha OB05G14280 I 0.874
29957.m001411 Ricinus communis 29957.m001411 I 0.869
Pm000277 Prunus mume Pm000277 I 0.869
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.869
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.869
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.863
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.859
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.859
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.859
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.859
mgf020556m Mimulus guttatus mgf020556m I 0.859
Ca_15642 Cicer arietinum Ca_15642 I 0.859
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.859
PK03716.1 Cannabis sativa PK03716.1 I 0.853
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.848
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.848
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.848
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.848
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.848
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.848
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.848
OBART05G04570 Oryza barthii OBART05G04570 I 0.848
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.848
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.848
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.848
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.848
OS05G0165450 Oryza sativa OS05G0165450 I 0.848
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.848
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.848
Si012018m.g Setaria italica Si012018m.g I 0.838
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.838
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.838
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.830
F775_52636 Aegilops tauschii F775_52636 I 0.828
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.828
F775_25790 Aegilops tauschii F775_25790 I 0.828
Bo4g172950 Brassica oleracea Bo4g172950 I 0.828
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.828
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.828
OBART01G35680 Oryza barthii OBART01G35680 I 0.828
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.828
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.828
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.828
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.828
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.828
OB01G44400 Oryza brachyantha OB01G44400 I 0.828
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.828
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.828
Si004575m.g Setaria italica Si004575m.g I 0.828
Bra021627 Brassica rapa Bra021627 I 0.828
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.828
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.828
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.828
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.828
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.828
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.828
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.828
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.828
OS01G0825000 Oryza sativa OS01G0825000 I 0.828
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.828
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.828
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.828
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.818
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.818
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.818
Bo4g059520 Brassica oleracea Bo4g059520 I 0.818
Bra018320 Brassica rapa Bra018320 I 0.818
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.818
LBD13 Arabidopsis thaliana AT2G30340 D 0.818
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.818
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.818
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.818
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.818
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.818
Bo4g190140 Brassica oleracea Bo4g190140 I 0.816
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.808
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.808
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.808
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.788
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.778
Cla006731 Citrullus lanatus Cla006731 I 0.764
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.763
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.737
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.729
PK29334.1 Cannabis sativa PK29334.1 I 0.719
Si026864m.g Setaria italica Si026864m.g I 0.717
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.717
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.717
F775_33210 Aegilops tauschii F775_33210 I 0.712
TCM_032557 Theobroma cacao TCM_032557 I 0.707
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.707
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.707
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.707
30169.m006340 Ricinus communis 30169.m006340 I 0.707
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.707
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
PK17019.1 Cannabis sativa PK17019.1 I 0.706