MDP0000322059 (Malus domestica)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 MDP0000322059 T247123_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.758 0.758
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.758 0.758
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.747 0.747
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.747 0.747
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.747 0.747
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.747 0.747
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.747 0.747
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000322059 LOB 928 1027

Links

Other LOB family TFs
Other Malus domestica TFs

259 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pm028642 Prunus mume Pm028642 I 0.960
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.960
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.960
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.960
TCM_025849 Theobroma cacao TCM_025849 I 0.949
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.949
30072.m000955 Ricinus communis 30072.m000955 I 0.939
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.939
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.939
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.929
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.929
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.929
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.929
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.919
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.919
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.919
Bra036436 Brassica rapa Bra036436 I 0.919
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.919
Bo1g153580 Brassica oleracea Bo1g153580 I 0.919
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.919
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.919
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.919
LBD20 Arabidopsis thaliana AT3G03760 I 0.919
mgf006429m Mimulus guttatus mgf006429m I 0.909
chr1.LjT38H23.30.nd Lotus japonicus chr1.LjT38H23.30.nd I 0.899
Cla002965 Citrullus lanatus Cla002965 I 0.889
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.879
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.869
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.859
GLYMA10G11031 Glycine max GLYMA10G11031 I 0.848
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.839
GLYMA02G27230 Glycine max GLYMA02G27230 I 0.838
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.838
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.838
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.838
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.838
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.828
chr2.LjT13P17.280.nd Lotus japonicus chr2.LjT13P17.280.nd I 0.818
Ca_19716 Cicer arietinum Ca_19716 I 0.808
GSMUA_Achr9G10530_001 Musa acuminata GSMUA_Achr9G10530_001 I 0.798
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.798
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.798
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.798
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.798
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.798
Cla007068 Citrullus lanatus Cla007068 I 0.798
Pm017936 Prunus mume Pm017936 I 0.798
TCM_005496 Theobroma cacao TCM_005496 I 0.793
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.788
OS03G0246900 Oryza sativa OS03G0246900 I 0.788
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.788
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.788
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.788
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.788
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.788
OBART03G10450 Oryza barthii OBART03G10450 I 0.788
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.788
30174.m008898 Ricinus communis 30174.m008898 I 0.788
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.788
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.788
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.788
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.788
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.788
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.788
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.788
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.788
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.788
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.788
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.788
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.788
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.788
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.788
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.778
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.778
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.778
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.778
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.778
MTR_6g027710 Medicago truncatula MTR_6g027710 I 0.778
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.778
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.778
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.777
OB10G12360 Oryza brachyantha OB10G12360 I 0.768
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.768
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.768
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.768
Bra008514 Brassica rapa Bra008514 I 0.768
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.768
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.768
Bo2g097560 Brassica oleracea Bo2g097560 I 0.768
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.768
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.768
Ca_12213 Cicer arietinum Ca_12213 I 0.768
Bra040311 Brassica rapa Bra040311 I 0.768
Bo3g036000 Brassica oleracea Bo3g036000 I 0.763
OS10G0162600 Oryza sativa OS10G0162600 I 0.758
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.758
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.758
TCM_004106 Theobroma cacao TCM_004106 I 0.758
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.758
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.758
Bra037323 Brassica rapa Bra037323 I 0.758
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.758
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.758
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.758
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.758
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.758
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.758
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.758
Bo4g195520 Brassica oleracea Bo4g195520 I 0.758
Bo4g024620 Brassica oleracea Bo4g024620 I 0.758
Bo9g002160 Brassica oleracea Bo9g002160 I 0.758
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.758
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.758
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.758
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.758
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.758
LBD18 Arabidopsis thaliana AT2G45420 D 0.758
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.758
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.758
Bra004910 Brassica rapa Bra004910 I 0.758
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.758
Bra004693 Brassica rapa Bra004693 I 0.747
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.747
TCM_005497 Theobroma cacao TCM_005497 I 0.747
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.747
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.747
LBD16 Arabidopsis thaliana AT2G42430 D 0.747
Pm017935 Prunus mume Pm017935 I 0.747
LBD30 Arabidopsis thaliana AT4G00220 D 0.747
Pm020629 Prunus mume Pm020629 I 0.747
Bo4g191530 Brassica oleracea Bo4g191530 I 0.747
Bo4g016000 Brassica oleracea Bo4g016000 I 0.747
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.747
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.747
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.747
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.747
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.747
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.747
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.747
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.747
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.747
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.747
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.747
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.747
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.747
MDP0000429067 Malus domestica MDP0000429067 I 0.747
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.747
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.747
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.747
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.747
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.747
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.747
29883.m002035 Ricinus communis 29883.m002035 I 0.737
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.737
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.737
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.737
30174.m008897 Ricinus communis 30174.m008897 I 0.737
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.737
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.737
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.737
Cla006088 Citrullus lanatus Cla006088 I 0.737
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.737
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.737
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.737
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.737
MDP0000254224 Malus domestica MDP0000254224 I 0.737
Bra016877 Brassica rapa Bra016877 I 0.737
PK25573.1 Cannabis sativa PK25573.1 I 0.737
MDP0000145761 Malus domestica MDP0000145761 I 0.737
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.737
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.737
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.737
POPTR_0047s00280 Populus trichocarpa POPTR_0047s00280 I 0.731
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.727
Bo9g002150 Brassica oleracea Bo9g002150 I 0.727
Bo3g036030 Brassica oleracea Bo3g036030 I 0.727
Bra000257 Brassica rapa Bra000257 I 0.727
Bra037322 Brassica rapa Bra037322 I 0.727
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.727
MTR_1g070220 Medicago truncatula MTR_1g070220 I 0.727
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.727
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.727
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.727
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.727
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.727
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.727
Ca_19598 Cicer arietinum Ca_19598 I 0.727
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.727
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.727
OB03G20590 Oryza brachyantha OB03G20590 I 0.727
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.727
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.727
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.717
MDP0000131964 Malus domestica MDP0000131964 I 0.717
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.717
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.717
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.717
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.717
OB02G44330 Oryza brachyantha OB02G44330 I 0.717
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.717
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.717
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.717
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.717
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.717
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.717
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.717
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.717
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.717
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.717
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.717
OS02G0820500 Oryza sativa OS02G0820500 I 0.717
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.717
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.717
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.717
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.717
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.717
Ca_07763 Cicer arietinum Ca_07763 I 0.717
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.717
Si019578m.g Setaria italica Si019578m.g I 0.717
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.717
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.717
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.717
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.717
Cla007069 Citrullus lanatus Cla007069 I 0.717
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.707
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.707
Si040019m.g Setaria italica Si040019m.g I 0.707
OBART03G03830 Oryza barthii OBART03G03830 I 0.707
OB03G13890 Oryza brachyantha OB03G13890 I 0.707
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.707
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.707
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.707
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.707
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.707
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.707
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.707
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.707
LBD31 Arabidopsis thaliana AT4G00210 I 0.707
Bo4g024610 Brassica oleracea Bo4g024610 I 0.707
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.707
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.707
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.707
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.707
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.707
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.707
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.707
Pm020627 Prunus mume Pm020627 I 0.707
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.707
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.707
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.707
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.707
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.707
PGSC0003DMG400009716 Solanum tuberosum PGSC0003DMG400009716 I 0.707
OS03G0149100 Oryza sativa OS03G0149100 I 0.707
PRUPE_ppa019939mg Prunus persica PRUPE_ppa019939mg I 0.707
PRUPE_ppa025889mg Prunus persica PRUPE_ppa025889mg I 0.707
Solyc09g066270.2 Solanum lycopersicum Solyc09g066270.2 I 0.707
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.707
MDP0000159122 Malus domestica MDP0000159122 I 0.707