orange1.1g041368m.g (Citrus sinensis)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 orange1.1g041368m.g T247168_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.780 0.780
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.780 0.780
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.758 0.758
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.758 0.758
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.747 0.747
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.747 0.747
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g041368m LOB 11 102

Links

Other LOB family TFs
Other Citrus sinensis TFs

175 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.956
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.846
Ca_19598 Cicer arietinum Ca_19598 I 0.835
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.824
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.824
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.824
PK25573.1 Cannabis sativa PK25573.1 I 0.813
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.813
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.813
MDP0000429067 Malus domestica MDP0000429067 I 0.802
Pm017935 Prunus mume Pm017935 I 0.802
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.802
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.802
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.791
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.791
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.791
mgf020735m Mimulus guttatus mgf020735m I 0.791
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.791
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.791
30174.m008897 Ricinus communis 30174.m008897 I 0.791
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.780
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.780
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.780
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.780
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.780
LBD19 Arabidopsis thaliana AT2G45410 D 0.780
Cla007069 Citrullus lanatus Cla007069 I 0.780
TCM_005497 Theobroma cacao TCM_005497 I 0.780
Ca_20429 Cicer arietinum Ca_20429 I 0.780
Ca_20428 Cicer arietinum Ca_20428 I 0.780
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.777
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.769
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.769
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.769
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.769
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.769
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.769
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.769
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.769
Cla007068 Citrullus lanatus Cla007068 I 0.769
30174.m008898 Ricinus communis 30174.m008898 I 0.769
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.769
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.769
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.769
MDP0000254224 Malus domestica MDP0000254224 I 0.769
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.769
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.769
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.769
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.769
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.769
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.769
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.769
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.766
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.758
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.758
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.758
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.758
OS03G0246900 Oryza sativa OS03G0246900 I 0.758
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.758
LBD31 Arabidopsis thaliana AT4G00210 I 0.758
LBD30 Arabidopsis thaliana AT4G00220 D 0.758
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.758
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.758
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.758
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.758
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.758
Bra037323 Brassica rapa Bra037323 I 0.758
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.758
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.758
Bo9g002160 Brassica oleracea Bo9g002160 I 0.758
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.758
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.758
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.758
TCM_005496 Theobroma cacao TCM_005496 I 0.758
OBART03G10450 Oryza barthii OBART03G10450 I 0.758
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.758
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.758
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.758
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.758
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.758
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.758
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.747
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.747
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.747
Bra040311 Brassica rapa Bra040311 I 0.747
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.747
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.747
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.747
Bra004910 Brassica rapa Bra004910 I 0.747
Bo4g024620 Brassica oleracea Bo4g024620 I 0.747
Bo4g195520 Brassica oleracea Bo4g195520 I 0.747
chr1.CM1255.90.nc Lotus japonicus chr1.CM1255.90.nc N 0.747
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.747
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.747
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.747
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.747
OB03G20590 Oryza brachyantha OB03G20590 I 0.747
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.747
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.737
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.737
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.736
OB10G12360 Oryza brachyantha OB10G12360 I 0.736
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.736
LBD31 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002970 N 0.736
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.736
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.736
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.727
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.725
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.725
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.725
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.725
Bra040312 Brassica rapa Bra040312 I 0.725
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.725
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.725
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.725
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.725
Bo4g195510 Brassica oleracea Bo4g195510 I 0.725
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.725
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.725
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.725
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.725
OS10G0162600 Oryza sativa OS10G0162600 I 0.725
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.717
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.717
Bo4g024610 Brassica oleracea Bo4g024610 I 0.714
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.714
OB08G30680 Oryza brachyantha OB08G30680 I 0.714
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.714
OLONG_020841 Oryza longistaminata OLONG_020841 I 0.714
OGLUM03G03710 Oryza glumaepatula OGLUM03G03710 I 0.714
Cla006087 Citrullus lanatus Cla006087 I 0.714
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.707
Pm017936 Prunus mume Pm017936 I 0.707
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.707
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.703
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.703
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.703
Thhalv10006226m.g Eutrema salsugineum Thhalv10006226m.g I 0.703
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.703
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.703
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.703
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.703
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.703
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.703
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.703
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.703
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.703
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.703
OB03G13890 Oryza brachyantha OB03G13890 I 0.703
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.703
OBART03G03830 Oryza barthii OBART03G03830 I 0.703
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.703
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.703
Bo8g092560 Brassica oleracea Bo8g092560 I 0.703
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.703
Bo9g002150 Brassica oleracea Bo9g002150 I 0.703
Bra037322 Brassica rapa Bra037322 I 0.703
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.703
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.703
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.703
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.703
28428.m000040 Ricinus communis 28428.m000040 I 0.703
Cla021625 Citrullus lanatus Cla021625 I 0.703
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.703
mgf020773m Mimulus guttatus mgf020773m I 0.703
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.703
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.703
TRIUR3_25587 Triticum urartu TRIUR3_25587 I 0.703
Si040019m.g Setaria italica Si040019m.g I 0.703
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.703
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.703
OS03G0149100 Oryza sativa OS03G0149100 I 0.703
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.703
Si015156m.g Setaria italica Si015156m.g I 0.703
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.703