Pavir.Ca00718 (Panicum virgatum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pavir.Ca00718 T247187_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN

NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca00718.1.p LOB 37 135

Links

Other LOB family TFs
Other Panicum virgatum TFs

198 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.J04684 Panicum virgatum Pavir.J04684 I 1.000
Si024430m.g Setaria italica Si024430m.g N 0.980
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.980
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.970
OB05G11740 Oryza brachyantha OB05G11740 I 0.970
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.960
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.939
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.929
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.899
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.899
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.899
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.899
TCM_041094 Theobroma cacao TCM_041094 I 0.879
30111.m000703 Ricinus communis 30111.m000703 I 0.879
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.879
MDP0000151784 Malus domestica MDP0000151784 I 0.869
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.869
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.869
MDP0000123013 Malus domestica MDP0000123013 I 0.869
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.869
Cla000556 Citrullus lanatus Cla000556 I 0.869
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.869
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.869
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.869
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.869
TCM_043081 Theobroma cacao TCM_043081 I 0.869
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.859
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.859
Pm000938 Prunus mume Pm000938 I 0.859
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.859
Ca_14605 Cicer arietinum Ca_14605 I 0.859
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.859
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.859
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.859
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.859
MDP0000218986 Malus domestica MDP0000218986 I 0.859
MDP0000318244 Malus domestica MDP0000318244 I 0.859
MDP0000319331 Malus domestica MDP0000319331 I 0.859
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.859
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.859
PK27389.1 Cannabis sativa PK27389.1 I 0.859
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.859
PK23777.1 Cannabis sativa PK23777.1 I 0.848
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.848
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.848
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.848
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.848
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.848
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.848
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.848
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.848
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.848
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.848
mgf015666m Mimulus guttatus mgf015666m N 0.848
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.848
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.848
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.848
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.848
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.848
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.848
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.848
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.848
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.848
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.848
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.848
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.838
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.838
OBART03G13260 Oryza barthii OBART03G13260 N 0.838
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.838
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.838
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.838
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.838
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.838
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.838
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.838
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.838
Pm018585 Prunus mume Pm018585 I 0.838
Ca_04287 Cicer arietinum Ca_04287 I 0.838
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.838
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.838
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.838
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.838
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.838
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.838
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.838
OS03G0287400 Oryza sativa OS03G0287400 N 0.838
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.838
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.828
Cla020379 Citrullus lanatus Cla020379 I 0.828
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.828
OB03G23270 Oryza brachyantha OB03G23270 N 0.828
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.828
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.828
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.828
Si037280m.g Setaria italica Si037280m.g N 0.828
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.828
MDP0000879799 Malus domestica MDP0000879799 N 0.818
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.818
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.818
F775_02335 Aegilops tauschii F775_02335 N 0.808
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.808
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.808
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.808
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.808
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.808
MDP0000822986 Malus domestica MDP0000822986 I 0.808
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.808
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.798
Cla005134 Citrullus lanatus Cla005134 N 0.798
Bra018675 Brassica rapa Bra018675 N 0.798
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.798
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.798
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.798
Bo5g008590 Brassica oleracea Bo5g008590 N 0.798
mgf022524m Mimulus guttatus mgf022524m N 0.788
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.788
Ca_02507 Cicer arietinum Ca_02507 N 0.788
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.788
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.788
Cla005133 Citrullus lanatus Cla005133 N 0.778
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.778
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.778
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.778
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.768
LBD11 Arabidopsis thaliana AT2G28500 N 0.768
mgf019622m Mimulus guttatus mgf019622m N 0.768
Bra000491 Brassica rapa Bra000491 N 0.768
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.768
Bo8g112780 Brassica oleracea Bo8g112780 N 0.768
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.768
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.758
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.758
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.758
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.758
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.758
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.758
VIT_13s0019g03810 Vitis vinifera VIT_13s0019g03810 N 0.758
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.758
Bra031599 Brassica rapa Bra031599 N 0.758
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.758
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.758
Bra011942 Brassica rapa Bra011942 N 0.758
Bo01039s010 Brassica oleracea Bo01039s010 N 0.758
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.747
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.747
Bo4g165420 Brassica oleracea Bo4g165420 N 0.747
Bra035698 Brassica rapa Bra035698 N 0.747
Bo3g040220 Brassica oleracea Bo3g040220 N 0.747
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.747
Si037583m.g Setaria italica Si037583m.g I 0.727
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.727
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.727
OGLUM05G01700 Oryza glumaepatula OGLUM05G01700 N 0.727
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.727
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.727
Cucsa.275710 Cucumis sativus Cucsa.275710 N 0.727
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.727
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.727
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.727
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.723
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.717
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.717
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
F775_08326 Aegilops tauschii F775_08326 I 0.717
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.717
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.717
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.717
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.717
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.717
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.717
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.717
PK11564.1 Cannabis sativa PK11564.1 I 0.717
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.717
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I 0.717
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N 0.717
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.712
PK24688.1 Cannabis sativa PK24688.1 I 0.707
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.707
TRIUR3_11841 Triticum urartu TRIUR3_11841 I 0.707
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.707
Traes_4BS_E9E0C550B Triticum aestivum Traes_4BS_E9E0C550B I 0.707
Traes_4DS_DA077BB06 Triticum aestivum Traes_4DS_DA077BB06 I 0.707
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.707
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.707
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.707
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.707
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.707
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N 0.707
Cla013678 Citrullus lanatus Cla013678 I 0.707
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.707
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.707
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.707
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.707
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.707
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.707
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.707