Pavir.Ca01098 (Panicum virgatum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pavir.Ca01098 T247188_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG

CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.828 0.828
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG

CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.828 0.828
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca01098.1.p LOB 15 113

Links

Other LOB family TFs
Other Panicum virgatum TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.990
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.990
Si012018m.g Setaria italica Si012018m.g I 0.980
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.980
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.949
OBART05G04570 Oryza barthii OBART05G04570 I 0.949
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.949
OS05G0165450 Oryza sativa OS05G0165450 I 0.949
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.949
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.949
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.949
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.949
OB05G14280 Oryza brachyantha OB05G14280 I 0.943
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.929
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.929
F775_52636 Aegilops tauschii F775_52636 I 0.929
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.929
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.929
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.919
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.918
PK21617.1 Cannabis sativa PK21617.1 I 0.913
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.909
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.879
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.879
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.879
Si004575m.g Setaria italica Si004575m.g I 0.869
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.869
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.869
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.869
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.869
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.869
TCM_042262 Theobroma cacao TCM_042262 I 0.869
LBD15 Arabidopsis thaliana AT2G40470 I 0.869
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.869
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.869
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.869
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.869
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.869
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.869
OS01G0825000 Oryza sativa OS01G0825000 I 0.869
OBART01G35680 Oryza barthii OBART01G35680 I 0.869
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.869
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.869
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.869
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.869
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.869
PK17217.1 Cannabis sativa PK17217.1 I 0.859
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.859
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.859
Bra000188 Brassica rapa Bra000188 I 0.859
F775_25790 Aegilops tauschii F775_25790 I 0.859
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.859
TCM_045438 Theobroma cacao TCM_045438 I 0.859
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.859
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.859
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.859
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.859
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.859
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.859
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.859
OB01G44400 Oryza brachyantha OB01G44400 I 0.859
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.859
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.859
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.859
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.859
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.859
Bo3g034980 Brassica oleracea Bo3g034980 I 0.859
Cla007391 Citrullus lanatus Cla007391 I 0.848
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.848
Ca_04126 Cicer arietinum Ca_04126 I 0.848
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.848
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.848
Bo4g012620 Brassica oleracea Bo4g012620 I 0.848
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.848
Bo4g190210 Brassica oleracea Bo4g190210 I 0.848
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.848
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.848
Bra004572 Brassica rapa Bra004572 I 0.848
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.848
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.848
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.848
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.848
mgf020556m Mimulus guttatus mgf020556m I 0.848
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.848
29729.m002335 Ricinus communis 29729.m002335 I 0.848
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.838
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.838
29957.m001411 Ricinus communis 29957.m001411 I 0.838
mgf011471m Mimulus guttatus mgf011471m I 0.838
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.838
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.838
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.838
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.838
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.838
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.838
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.838
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.838
Bra016992 Brassica rapa Bra016992 I 0.838
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.828
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.828
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.828
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.828
Bra018320 Brassica rapa Bra018320 I 0.828
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.828
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.828
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.828
Bo4g059520 Brassica oleracea Bo4g059520 I 0.828
LBD13 Arabidopsis thaliana AT2G30340 D 0.828
MDP0000167580 Malus domestica MDP0000167580 I 0.820
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.818
MDP0000278334 Malus domestica MDP0000278334 I 0.818
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.818
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.818
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.818
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.818
Bra021627 Brassica rapa Bra021627 I 0.818
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.818
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.818
Bo4g172950 Brassica oleracea Bo4g172950 I 0.818
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.818
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.818
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.818
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.808
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.808
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.808
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.808
Ca_12420 Cicer arietinum Ca_12420 I 0.808
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.808
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.808
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.808
Pm000277 Prunus mume Pm000277 I 0.808
Ca_15642 Cicer arietinum Ca_15642 I 0.808
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.808
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.804
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.798
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.798
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.778
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.768
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.768
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.763
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.747
Bo4g190140 Brassica oleracea Bo4g190140 I 0.737
PK03716.1 Cannabis sativa PK03716.1 I 0.735
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.729
PK29334.1 Cannabis sativa PK29334.1 I 0.703