Pavir.Ea01295 (Panicum virgatum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pavir.Ea01295 T247193_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea01295.1.p LOB 4 109

Links

Other LOB family TFs
Other Panicum virgatum TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Sb01g032580 Sorghum bicolor Sb01g032580 N 0.980
GRMZM2G060544 Zea mays GRMZM2G060544 N 0.980
Pavir.Eb02390 Panicum virgatum Pavir.Eb02390 N 0.980
OS01G0511000 Oryza sativa OS01G0511000 N 0.949
OPUNC01G18000 Oryza punctata OPUNC01G18000 N 0.949
OMERI01G16320 Oryza meridionalis OMERI01G16320 N 0.949
OBART01G17510 Oryza barthii OBART01G17510 N 0.949
OGLUM01G20320 Oryza glumaepatula OGLUM01G20320 N 0.949
ONIVA01G19320 Oryza nivara ONIVA01G19320 N 0.949
ORUFI01G19440 Oryza rufipogon ORUFI01G19440 N 0.949
BGIOSGA001546 Oryza indica BGIOSGA001546 N 0.949
LPERR01G15290 Leersia perrieri LPERR01G15290 N 0.939
GRMZM2G386674 Zea mays GRMZM2G386674 N 0.918
Sb09g030780 Sorghum bicolor Sb09g030780 N 0.908
GRMZM2G073044 Zea mays GRMZM2G073044 N 0.898
BRADI4G16750 Brachypodium distachyon BRADI4G16750 N 0.888
Pavir.J01483 Panicum virgatum Pavir.J01483 N 0.888
BRADI4G16740 Brachypodium distachyon BRADI4G16740 N 0.888
Si022660m.g Setaria italica Si022660m.g N 0.888
Sb09g025710 Sorghum bicolor Sb09g025710 N 0.887
Eucgr.J01501 Eucalyptus grandis Eucgr.J01501 N 0.878
evm.TU.supercontig_282.15 Carica papaya evm.TU.supercontig_282.15 N 0.878
TRAES3BF008500030CFD_g Triticum aestivum TRAES3BF008500030CFD_g N 0.878
Pavir.J00526 Panicum virgatum Pavir.J00526 N 0.878
TRAES3BF008600030CFD_g Triticum aestivum TRAES3BF008600030CFD_g N 0.878
GSMUA_Achr9G00580_001 Musa acuminata GSMUA_Achr9G00580_001 N 0.878
GSMUA_Achr4G06820_001 Musa acuminata GSMUA_Achr4G06820_001 N 0.867
GSMUA_Achr3G29520_001 Musa acuminata GSMUA_Achr3G29520_001 N 0.867
GSMUA_Achr4G13790_001 Musa acuminata GSMUA_Achr4G13790_001 N 0.867
AMTR_s00079p00088960 Amborella trichopoda AMTR_s00079p00088960 N 0.867
Cla007208 Citrullus lanatus Cla007208 N 0.867
Cucsa.031350 Cucumis sativus Cucsa.031350 N 0.867
cassava6185.valid.m1 Manihot esculenta cassava6185.valid.m1 N 0.857
TCM_019459 Theobroma cacao TCM_019459 N 0.857
Ciclev10013705m.g Citrus clementina Ciclev10013705m.g N 0.857
MTR_7g007010 Medicago truncatula MTR_7g007010 N 0.857
Bo3g055690 Brassica oleracea Bo3g055690 N 0.857
Bra021433 Brassica rapa Bra021433 N 0.857
MDP0000136037 Malus domestica MDP0000136037 N 0.857
orange1.1g022591m.g Citrus sinensis orange1.1g022591m.g N 0.857
GSMUA_Achr4G03700_001 Musa acuminata GSMUA_Achr4G03700_001 N 0.857
PRUPE_ppa009213mg Prunus persica PRUPE_ppa009213mg N 0.847
cassava43296.valid.m1 Manihot esculenta cassava43296.valid.m1 N 0.847
GLYMA13G07590 Glycine max GLYMA13G07590 N 0.847
GLYMA08G48040 Glycine max GLYMA08G48040 N 0.847
Aquca_026_00293 Aquilegia coerulea Aquca_026_00293 N 0.847
GSMUA_AchrUn_randomG00460_001 Musa acuminata GSMUA_AchrUn_randomG00460_001 N 0.847
Gorai.008G056000 Gossypium raimondii Gorai.008G056000 N 0.847
cassava38982.m1 Manihot esculenta cassava38982.m1 N 0.847
Bo1g156310 Brassica oleracea Bo1g156310 N 0.847
chr1.LjT23D08.90.nc Lotus japonicus chr1.LjT23D08.90.nc N 0.847
GSMUA_Achr1G20970_001 Musa acuminata GSMUA_Achr1G20970_001 N 0.847
VIT_14s0006g02950 Vitis vinifera VIT_14s0006g02950 N 0.847
Thhalv10021328m.g Eutrema salsugineum Thhalv10021328m.g N 0.847
mgf010898m Mimulus guttatus mgf010898m N 0.837
Traes_2DL_9D8B5B436 Triticum aestivum Traes_2DL_9D8B5B436 N 0.837
Traes_2BL_3A840DB921 Triticum aestivum Traes_2BL_3A840DB921 N 0.837
POPTR_0005s15670 Populus trichocarpa POPTR_0005s15670 N 0.837
cassava60.valid.m1 Manihot esculenta cassava60.valid.m1 N 0.837
GSMUA_Achr9G21360_001 Musa acuminata GSMUA_Achr9G21360_001 N 0.837
Traes_2AL_450404EA6 Triticum aestivum Traes_2AL_450404EA6 N 0.837
Solyc02g085910.2 Solanum lycopersicum Solyc02g085910.2 N 0.837
PGSC0003DMG400012653 Solanum tuberosum PGSC0003DMG400012653 N 0.837
GLYMA18G53440 Glycine max GLYMA18G53440 N 0.837
Carubv10015363m.g Capsella rubella Carubv10015363m.g N 0.837
MLOC_58304 Hordeum vulgare MLOC_58304 N 0.837
Cagra.1194s0049 Capsella grandiflora Cagra.1194s0049 N 0.837
GLYMA19G06280 Glycine max GLYMA19G06280 N 0.837
Bostr.1460s0172 Boechera stricta Bostr.1460s0172 N 0.837
GSMUA_Achr2G14600_001 Musa acuminata GSMUA_Achr2G14600_001 N 0.827
LBD40 Arabidopsis thaliana AT1G67100 N 0.827
PK03169.1 Cannabis sativa PK03169.1 N 0.827
evm.TU.supercontig_3.514 Carica papaya evm.TU.supercontig_3.514 N 0.827
gene10300-v1.0-hybrid Fragaria vesca gene10300-v1.0-hybrid N 0.827
AC234149.1_FG002 Zea mays AC234149.1_FG002 N 0.827
SapurV1A.0315s0090 Salix purpurea SapurV1A.0315s0090 N 0.827
Carubv10021721m.g Capsella rubella Carubv10021721m.g N 0.827
LBD41 Arabidopsis thaliana AT3G02550 N 0.827
Thhalv10019048m.g Eutrema salsugineum Thhalv10019048m.g N 0.827
Cagra.6164s0006 Capsella grandiflora Cagra.6164s0006 N 0.827
POPTR_0008s11950 Populus trichocarpa POPTR_0008s11950 N 0.827
OMERI01G01380 Oryza meridionalis OMERI01G01380 N 0.827
Sb09g025700 Sorghum bicolor Sb09g025700 N 0.827
POPTR_0004s09920 Populus trichocarpa POPTR_0004s09920 N 0.827
LBD41 Arabidopsis lyrata fgenesh2_kg.3__191__AT3G02550.1 N 0.827
VIT_17s0000g03720 Vitis vinifera VIT_17s0000g03720 N 0.816
27524.m000293 Ricinus communis 27524.m000293 N 0.816
VIT_01s0011g03540 Vitis vinifera VIT_01s0011g03540 N 0.816
Bostr.26959s0198 Boechera stricta Bostr.26959s0198 N 0.816
Lus10028470.g Linum usitatissimum Lus10028470.g N 0.816
TCM_009888 Theobroma cacao TCM_009888 N 0.816
ONIVA01G02110 Oryza nivara ONIVA01G02110 N 0.816
OGLUM01G02100 Oryza glumaepatula OGLUM01G02100 N 0.816
OB01G11830 Oryza brachyantha OB01G11830 N 0.816
OPUNC01G01670 Oryza punctata OPUNC01G01670 N 0.816
Sb03g007270 Sorghum bicolor Sb03g007270 N 0.816
ORUFI01G02010 Oryza rufipogon ORUFI01G02010 N 0.816
ORGLA01G0016600 Oryza glaberrima ORGLA01G0016600 N 0.816
LPERR01G01830 Leersia perrieri LPERR01G01830 N 0.816
OBART01G01940 Oryza barthii OBART01G01940 N 0.816
LBD40 Arabidopsis lyrata Al_scaffold_0002_1337 N 0.816
BGIOSGA002703 Oryza indica BGIOSGA002703 N 0.816
Bo2g055410 Brassica oleracea Bo2g055410 N 0.816
Traes_4DL_E0847FBC5 Triticum aestivum Traes_4DL_E0847FBC5 N 0.806
28207.m000107 Ricinus communis 28207.m000107 N 0.806
MTR_6g018270 Medicago truncatula MTR_6g018270 N 0.806
GRMZM2G132693 Zea mays GRMZM2G132693 N 0.806
SapurV1A.0851s0010 Salix purpurea SapurV1A.0851s0010 N 0.806
mgf011656m Mimulus guttatus mgf011656m N 0.806
Carubv10002654m.g Capsella rubella Carubv10002654m.g N 0.806
POPTR_0010s13480 Populus trichocarpa POPTR_0010s13480 N 0.806
PGSC0003DMG400005719 Solanum tuberosum PGSC0003DMG400005719 N 0.796
Pavir.Ea00650 Panicum virgatum Pavir.Ea00650 N 0.796
Bostr.26959s0040 Boechera stricta Bostr.26959s0040 N 0.796
Bostr.2902s0344 Boechera stricta Bostr.2902s0344 N 0.796
Cucsa.283560 Cucumis sativus Cucsa.283560 N 0.796
SapurV1A.0079s0150 Salix purpurea SapurV1A.0079s0150 N 0.796
Carubv10000015m.g Capsella rubella Carubv10000015m.g N 0.796
Thhalv10019494m.g Eutrema salsugineum Thhalv10019494m.g N 0.796
Cagra.6845s0054 Capsella grandiflora Cagra.6845s0054 N 0.796
Cucsa.199060 Cucumis sativus Cucsa.199060 N 0.796
Si002412m.g Setaria italica Si002412m.g N 0.796
Cla020705 Citrullus lanatus Cla020705 N 0.796
Cla019264 Citrullus lanatus Cla019264 N 0.796
Solyc03g119530.2 Solanum lycopersicum Solyc03g119530.2 N 0.796
Ca_22996 Cicer arietinum Ca_22996 N 0.786
Si004887m.g Setaria italica Si004887m.g N 0.786
SapurV1A.0078s0410 Salix purpurea SapurV1A.0078s0410 N 0.786
LBD42 Arabidopsis lyrata fgenesh2_kg.2__1100__AT1G68510.1 N 0.786
Gorai.005G190300 Gossypium raimondii Gorai.005G190300 N 0.786
Gorai.002G217800 Gossypium raimondii Gorai.002G217800 N 0.786
Pavir.J11724 Panicum virgatum Pavir.J11724 N 0.786
Eucgr.G02321 Eucalyptus grandis Eucgr.G02321 N 0.786
OB01G27020 Oryza brachyantha OB01G27020 N 0.786
LBD42 Arabidopsis thaliana AT1G68510 N 0.786
PGSC0003DMG400014547 Solanum tuberosum PGSC0003DMG400014547 N 0.786
Eucgr.F02492 Eucalyptus grandis Eucgr.F02492 N 0.776
gene03741-v1.0-hybrid Fragaria vesca gene03741-v1.0-hybrid N 0.776
mgf017960m Mimulus guttatus mgf017960m N 0.776
Traes_4BL_7F70575F9 Triticum aestivum Traes_4BL_7F70575F9 N 0.776
Cagra.3364s0006 Capsella grandiflora Cagra.3364s0006 N 0.776
Bra004315 Brassica rapa Bra004315 N 0.776
Ciclev10016422m.g Citrus clementina Ciclev10016422m.g N 0.776
Solyc05g009320.2 Solanum lycopersicum Solyc05g009320.2 N 0.776
MDP0000233303 Malus domestica MDP0000233303 N 0.776
Carubv10022391m.g Capsella rubella Carubv10022391m.g N 0.776
LjSGA_023437.1 Lotus japonicus LjSGA_023437.1 N 0.765
orange1.1g038007m.g Citrus sinensis orange1.1g038007m.g N 0.765
Eucgr.K02222 Eucalyptus grandis Eucgr.K02222 N 0.765
orange1.1g045357m.g Citrus sinensis orange1.1g045357m.g N 0.765
Pm029059 Prunus mume Pm029059 N 0.765
Ciclev10022068m.g Citrus clementina Ciclev10022068m.g N 0.765
Bo6g106960 Brassica oleracea Bo6g106960 N 0.765
POPTR_0012s05340 Populus trichocarpa POPTR_0012s05340 N 0.765
evm.TU.supercontig_1.42 Carica papaya evm.TU.supercontig_1.42 N 0.765
PRUPE_ppa011233mg Prunus persica PRUPE_ppa011233mg N 0.755
GLYMA20G24950 Glycine max GLYMA20G24950 N 0.747
SELMODRAFT_105005 Selaginella moellendorffii SELMODRAFT_105005 N 0.745
SELMODRAFT_27399 Selaginella moellendorffii SELMODRAFT_27399 N 0.745
Traes_5BS_3EEBE3D51 Triticum aestivum Traes_5BS_3EEBE3D51 N 0.745
Traes_5BL_3EEBE3D51 Triticum aestivum Traes_5BL_3EEBE3D51 N 0.745
GLYMA08G31143 Glycine max GLYMA08G31143 N 0.735
MTR_6g453130 Medicago truncatula MTR_6g453130 N 0.735
TCM_012338 Theobroma cacao TCM_012338 N 0.735
Ca_05488 Cicer arietinum Ca_05488 N 0.735
Eucgr.B03016 Eucalyptus grandis Eucgr.B03016 N 0.735
Gorai.006G061200 Gossypium raimondii Gorai.006G061200 N 0.724
SELMODRAFT_37566 Selaginella moellendorffii SELMODRAFT_37566 N 0.724
VIT_01s0011g03530 Vitis vinifera VIT_01s0011g03530 N 0.724
SELMODRAFT_37570 Selaginella moellendorffii SELMODRAFT_37570 N 0.724
e_gw1.19.226.1 Physcomitrella patens e_gw1.19.226.1 N 0.714
gw1.41.215.1 Physcomitrella patens gw1.41.215.1 N 0.714
Sb02g038030 Sorghum bicolor Sb02g038030 N 0.714
GSMUA_Achr2G22720_001 Musa acuminata GSMUA_Achr2G22720_001 N 0.714
gw1.167.132.1 Physcomitrella patens gw1.167.132.1 N 0.704
PK15647.1 Cannabis sativa PK15647.1 N 0.704
Solyc02g092550.2 Solanum lycopersicum Solyc02g092550.2 N 0.704
MTR_1g110840 Medicago truncatula MTR_1g110840 N 0.704
PGSC0003DMG400024936 Solanum tuberosum PGSC0003DMG400024936 N 0.704