Pavir.Eb03580 (Panicum virgatum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pavir.Eb03580 T247200_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.798 0.798
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.798 0.798
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb03580.1.p LOB 57 155

Links

Other LOB family TFs
Other Panicum virgatum TFs

185 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si004575m.g Setaria italica Si004575m.g I 0.990
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.970
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.970
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.960
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.960
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.960
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.960
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.960
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.960
OBART01G35680 Oryza barthii OBART01G35680 I 0.960
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.960
OS01G0825000 Oryza sativa OS01G0825000 I 0.960
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.960
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.960
OB01G44400 Oryza brachyantha OB01G44400 I 0.949
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.949
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.949
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.939
F775_25790 Aegilops tauschii F775_25790 I 0.939
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.929
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.919
PK21617.1 Cannabis sativa PK21617.1 I 0.913
Si012018m.g Setaria italica Si012018m.g I 0.879
OB05G14280 Oryza brachyantha OB05G14280 I 0.874
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.869
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.869
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.869
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.869
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.869
OBART05G04570 Oryza barthii OBART05G04570 I 0.869
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.869
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.869
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.869
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.869
LBD15 Arabidopsis thaliana AT2G40470 I 0.869
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.869
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.869
PK17217.1 Cannabis sativa PK17217.1 I 0.869
OS05G0165450 Oryza sativa OS05G0165450 I 0.869
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.869
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.869
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.869
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.869
Cla007391 Citrullus lanatus Cla007391 I 0.859
Ca_04126 Cicer arietinum Ca_04126 I 0.859
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.859
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.859
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.859
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.859
Bo4g012620 Brassica oleracea Bo4g012620 I 0.859
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.859
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.859
TCM_045438 Theobroma cacao TCM_045438 I 0.859
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.859
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.859
Bo3g034980 Brassica oleracea Bo3g034980 I 0.859
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.859
Bo4g190210 Brassica oleracea Bo4g190210 I 0.859
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.859
Bra004572 Brassica rapa Bra004572 I 0.859
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.859
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.859
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.859
Bra000188 Brassica rapa Bra000188 I 0.859
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.859
F775_52636 Aegilops tauschii F775_52636 I 0.859
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.849
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.848
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.848
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.848
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.848
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.848
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.848
29729.m002335 Ricinus communis 29729.m002335 I 0.848
mgf011471m Mimulus guttatus mgf011471m I 0.848
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.848
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.848
mgf020556m Mimulus guttatus mgf020556m I 0.848
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.848
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.848
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.848
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.838
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.838
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.838
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.838
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.838
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.838
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.838
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.838
TCM_042262 Theobroma cacao TCM_042262 I 0.838
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.838
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.838
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.838
Bra016992 Brassica rapa Bra016992 I 0.838
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.838
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.838
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.828
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.828
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.828
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.828
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.828
MDP0000278334 Malus domestica MDP0000278334 I 0.828
Pm000277 Prunus mume Pm000277 I 0.818
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.818
Ca_15642 Cicer arietinum Ca_15642 I 0.818
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.818
Ca_12420 Cicer arietinum Ca_12420 I 0.818
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.818
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.808
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.808
Bra021627 Brassica rapa Bra021627 I 0.808
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.808
Bo4g172950 Brassica oleracea Bo4g172950 I 0.808
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.808
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.808
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.808
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.808
29957.m001411 Ricinus communis 29957.m001411 I 0.808
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.804
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.798
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.798
Bra018320 Brassica rapa Bra018320 I 0.798
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.798
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.798
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.798
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.798
Bo4g059520 Brassica oleracea Bo4g059520 I 0.798
LBD13 Arabidopsis thaliana AT2G30340 D 0.798
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.788
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.788
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.788
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.788
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.788
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.788
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.778
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.778
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.778
Bo4g190140 Brassica oleracea Bo4g190140 I 0.763
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.758
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.746
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.737
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.737
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.737
Si037583m.g Setaria italica Si037583m.g I 0.737
PK03716.1 Cannabis sativa PK03716.1 I 0.735
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.727
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.727
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.727
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.727
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.727
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.727
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.727
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.727
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.727
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.727
mgf026046m Mimulus guttatus mgf026046m I 0.727
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.727
PK11564.1 Cannabis sativa PK11564.1 I 0.717
Si026864m.g Setaria italica Si026864m.g I 0.717
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.717
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.717
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.712
Sb08g000575 Sorghum bicolor Sb08g000575 I 0.708
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.707
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.707
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.707
Cla013678 Citrullus lanatus Cla013678 I 0.707
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.707
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.707
MDP0000284409 Malus domestica MDP0000284409 I 0.707
Pm011040 Prunus mume Pm011040 I 0.707
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.707
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.707
MDP0000155138 Malus domestica MDP0000155138 I 0.707
MDP0000268890 Malus domestica MDP0000268890 I 0.707
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.707
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.707
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.707
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.707
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.707
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.707
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.707