Pavir.Ia02614 (Panicum virgatum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pavir.Ia02614 T247207_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.859 0.859
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.859 0.859
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.828 0.828
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.828 0.828
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.747 0.747
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.747 0.747
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.747 0.747
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND

HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.747 0.747
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG

CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.747 0.747
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia02614.1.p LOB 42 141

Links

Other LOB family TFs
Other Panicum virgatum TFs

352 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ARR13 Arabidopsis thaliana AT2G27070 N 0.000
Cucsa.132590 Cucumis sativus Cucsa.132590 N 0.000
Eucgr.C00380 Eucalyptus grandis Eucgr.C00380 I 0.000
Eucgr.C04050 Eucalyptus grandis Eucgr.C04050 I 0.000
evm.TU.supercontig_46.117 Carica papaya evm.TU.supercontig_46.117 I 0.000
Gorai.009G054200 Gossypium raimondii Gorai.009G054200 I 0.000
mgf001591m Mimulus guttatus mgf001591m I 0.000
mgf014863m Mimulus guttatus mgf014863m I 0.000
PGSC0003DMG400003196 Solanum tuberosum PGSC0003DMG400003196 I 0.000
SapurV1A.0705s0030 Salix purpurea SapurV1A.0705s0030 I 0.000
Solyc07g005140.2 Solanum lycopersicum Solyc07g005140.2 I 0.000
VIT_11s0206g00060 Vitis vinifera VIT_11s0206g00060 I 0.000