Pavir.J04684 (Panicum virgatum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pavir.J04684 T247225_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN

NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J04684.1.p LOB 36 134

Links

Other LOB family TFs
Other Panicum virgatum TFs

198 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_08326 Aegilops tauschii F775_08326 I 0.717
F775_02335 Aegilops tauschii F775_02335 N 0.808
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.818
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.808
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.778
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.758
LBD11 Arabidopsis thaliana AT2G28500 N 0.768
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.778
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.768
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.707
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.808
Bo8g112780 Brassica oleracea Bo8g112780 N 0.768
Bo5g008590 Brassica oleracea Bo5g008590 N 0.798
Bo3g040220 Brassica oleracea Bo3g040220 N 0.747
Bo01039s010 Brassica oleracea Bo01039s010 N 0.758
Bo4g165420 Brassica oleracea Bo4g165420 N 0.747
Bra031599 Brassica rapa Bra031599 N 0.758
Bra035698 Brassica rapa Bra035698 N 0.747
Bra018675 Brassica rapa Bra018675 N 0.798
Bra011942 Brassica rapa Bra011942 N 0.758
Bra000491 Brassica rapa Bra000491 N 0.768
PK24688.1 Cannabis sativa PK24688.1 I 0.707
PK27389.1 Cannabis sativa PK27389.1 I 0.859
PK11564.1 Cannabis sativa PK11564.1 I 0.717
PK23777.1 Cannabis sativa PK23777.1 I 0.848
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.758
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.788
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.798
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.758
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.707
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.848
Ca_04287 Cicer arietinum Ca_04287 I 0.838
Ca_14605 Cicer arietinum Ca_14605 I 0.859
Ca_02507 Cicer arietinum Ca_02507 N 0.788
Cla000556 Citrullus lanatus Cla000556 I 0.869
Cla005133 Citrullus lanatus Cla005133 N 0.778
Cla005134 Citrullus lanatus Cla005134 N 0.798
Cla013678 Citrullus lanatus Cla013678 I 0.707
Cla020379 Citrullus lanatus Cla020379 I 0.828
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.707
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.869
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.758
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.798
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.859
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.859
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.707
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.758
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.869
Cucsa.275710 Cucumis sativus Cucsa.275710 N 0.727
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.848
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.818
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.727
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.778
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.707
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.848
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.848
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.768
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.788
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.838
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.808
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.848
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.838
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.838
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.848
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.848
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.848
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.859
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.848
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.848
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.869
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.859
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.869
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.717
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.899
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.707
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.929
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.798
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.838
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.828
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.707
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.717
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.828
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.848
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.848
MDP0000879799 Malus domestica MDP0000879799 N 0.818
MDP0000318244 Malus domestica MDP0000318244 I 0.859
MDP0000822986 Malus domestica MDP0000822986 I 0.808
MDP0000123013 Malus domestica MDP0000123013 I 0.869
MDP0000151784 Malus domestica MDP0000151784 I 0.869
MDP0000218986 Malus domestica MDP0000218986 I 0.859
MDP0000319331 Malus domestica MDP0000319331 I 0.859
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.859
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.859
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.717
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.838
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.723
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.869
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.838
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.848
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.828
mgf022524m Mimulus guttatus mgf022524m N 0.788
mgf015666m Mimulus guttatus mgf015666m N 0.848
mgf019622m Mimulus guttatus mgf019622m N 0.768
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.859
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.758
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.758
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.879
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.848
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.828
OBART03G13260 Oryza barthii OBART03G13260 N 0.838
OB05G11740 Oryza brachyantha OB05G11740 I 0.970
OB03G23270 Oryza brachyantha OB03G23270 N 0.828
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.960
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.838
OGLUM05G01700 Oryza glumaepatula OGLUM05G01700 N 0.727
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.717
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.838
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.717
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.838
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.838
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.838
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.717
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.838
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.848
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.717
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.717
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.838
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.838
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.717
OS03G0287400 Oryza sativa OS03G0287400 N 0.838
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.848
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 1.000
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.727
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.848
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.727
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.707
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.707
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.712
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.869
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.859
Pm018585 Prunus mume Pm018585 I 0.838
Pm000938 Prunus mume Pm000938 I 0.859
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.848
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.859
30111.m000703 Ricinus communis 30111.m000703 I 0.879
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.869
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.859
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.707
Si024430m.g Setaria italica Si024430m.g N 0.980
Si037280m.g Setaria italica Si037280m.g N 0.828
Si037583m.g Setaria italica Si037583m.g I 0.727
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.828
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.808
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.768
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.828
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.707
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.758
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.808
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.707
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.707
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.707
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.838
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.727
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.980
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.848
TCM_041094 Theobroma cacao TCM_041094 I 0.879
TCM_043081 Theobroma cacao TCM_043081 I 0.869
Traes_4BS_E9E0C550B Triticum aestivum Traes_4BS_E9E0C550B I 0.707
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.899
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.899
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.808
Traes_4DS_DA077BB06 Triticum aestivum Traes_4DS_DA077BB06 I 0.707
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.899
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.788
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I 0.717
TRIUR3_11841 Triticum urartu TRIUR3_11841 I 0.707
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.717
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N 0.707
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.747
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.747
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.727
VIT_13s0019g03810 Vitis vinifera VIT_13s0019g03810 N 0.758
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N 0.717
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.747
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.798
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.838
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.838
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.758
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.848
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.848
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.727
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.838
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.970
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.939
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.727