CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Pavir.J05299
(
Panicum virgatum
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
Pavir.J05299
T247226_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J05299.1.p
LOB
69
167
RCAACKNQRRRCSQDCILAPYFPASDPQRYACVQRVFGASNVARMLQNLPIHERGKAADAMAVEAHRRVQDPVYGCAGVVGRLQGEIRAVQCELARTQA
Links
Other
LOB
family TFs
Other
Panicum virgatum
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J09684
Panicum virgatum
Pavir.J09684
N
0.970
Sb01g005700
Sorghum bicolor
Sb01g005700
N
0.879
GRMZM2G011385
Zea mays
GRMZM2G011385
N
0.879
Si039129m.g
Setaria italica
Si039129m.g
N
0.828
OPUNC03G33890
Oryza punctata
OPUNC03G33890
N
0.788
BGIOSGA013705
Oryza indica
BGIOSGA013705
N
0.778
OGLUM03G36620
Oryza glumaepatula
OGLUM03G36620
N
0.768
LPERR03G31200
Leersia perrieri
LPERR03G31200
N
0.768
ORGLA03G0338000
Oryza glaberrima
ORGLA03G0338000
N
0.755
BRADI3G40650
Brachypodium distachyon
BRADI3G40650
N
0.750
Traes_5BL_26B26165E
Triticum aestivum
Traes_5BL_26B26165E
N
0.750
ORUFI08G22960
Oryza rufipogon
ORUFI08G22960
N
0.747
ONIVA08G23410
Oryza nivara
ONIVA08G23410
N
0.747
OMERI02G02130
Oryza meridionalis
OMERI02G02130
N
0.747
OBART08G20460
Oryza barthii
OBART08G20460
N
0.747
OGLUM08G21760
Oryza glumaepatula
OGLUM08G21760
N
0.747
BGIOSGA029005
Oryza indica
BGIOSGA029005
N
0.747
OS08G0517100
Oryza sativa
OS08G0517100
N
0.735
OLONG_019406
Oryza longistaminata
OLONG_019406
N
0.735
OB08G27360
Oryza brachyantha
OB08G27360
N
0.727
OPUNC08G18660
Oryza punctata
OPUNC08G18660
N
0.717
Pavir.J04242
Panicum virgatum
Pavir.J04242
N
0.717
F775_04514
Aegilops tauschii
F775_04514
N
0.717
LPERR08G17300
Leersia perrieri
LPERR08G17300
N
0.717
Si015521m.g
Setaria italica
Si015521m.g
N
0.707
TRIUR3_34186
Triticum urartu
TRIUR3_34186
N
0.707