Pavir.J16692 (Panicum virgatum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pavir.J16692 T247237_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.859 0.859
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J16692.1.p LOB 33 131

Links

Other LOB family TFs
Other Panicum virgatum TFs

250 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29676.m001633 Ricinus communis 29676.m001633 I 0.758
29917.m001993 Ricinus communis 29917.m001993 I 0.707
29929.m004500 Ricinus communis 29929.m004500 I 0.859
30147.m013890 Ricinus communis 30147.m013890 I 0.727
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.737
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.798
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.768
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.707
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.828
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.727
AS2 Vitis vinifera VIT_00s0340g00090 I 0.859
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.859
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.778
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.803
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.919
Bo2g051420 Brassica oleracea Bo2g051420 I 0.859
Bo2g167820 Brassica oleracea Bo2g167820 I 0.747
Bo3g104760 Brassica oleracea Bo3g104760 I 0.717
Bo7g064360 Brassica oleracea Bo7g064360 I 0.778
Bo9g017470 Brassica oleracea Bo9g017470 I 0.727
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.778
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.717
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.859
Bra012112 Brassica rapa Bra012112 I 0.778
Bra038606 Brassica rapa Bra038606 I 0.717
Bra039733 Brassica rapa Bra039733 I 0.859
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.747
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.919
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.929
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.859
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.778
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.717
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.859
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.778
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.707
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.859
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.707
cassava16840.m1 Manihot esculenta cassava16840.m1 I 0.768
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.778
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.727
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.778
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.788
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.727
Ca_02124 Cicer arietinum Ca_02124 I 0.747
Ca_02125 Cicer arietinum Ca_02125 I 0.737
Ca_07463 Cicer arietinum Ca_07463 I 0.717
Ca_08824 Cicer arietinum Ca_08824 I 0.727
Ca_11161 Cicer arietinum Ca_11161 I 0.737
Ca_20200 Cicer arietinum Ca_20200 I 0.828
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.727
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.747
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.727
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.838
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.717
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.768
Cla005851 Citrullus lanatus Cla005851 I 0.838
Cla017388 Citrullus lanatus Cla017388 I 0.717
Cla019510 Citrullus lanatus Cla019510 I 0.727
Cla020438 Citrullus lanatus Cla020438 I 0.747
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.707
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.838
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.727
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.768
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.717
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.859
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.717
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.707
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.717
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.717
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.723
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.859
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I 0.737
F775_20715 Aegilops tauschii F775_20715 I 0.949
F775_21760 Aegilops tauschii F775_21760 I 0.929
F775_25656 Aegilops tauschii F775_25656 I 0.727
F775_33210 Aegilops tauschii F775_33210 I 0.767
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.859
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.747
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.707
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.727
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.717
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.747
GLYMA04G11991 Glycine max GLYMA04G11991 I 0.747
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.727
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.727
GLYMA05G09950 Glycine max GLYMA05G09950 I 0.707
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.747
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.727
GLYMA11G06210 Glycine max GLYMA11G06210 I 0.747
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.788
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.828
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.828
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.727
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.707
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.717
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.788
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.869
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.758
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.788
GRMZM2G096064 Zea mays GRMZM2G096064 I 0.798
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.980
GRMZM2G133806 Zea mays GRMZM2G133806 I 0.919
GSMUA_Achr11G26500_001 Musa acuminata GSMUA_Achr11G26500_001 I 0.833
GSMUA_Achr2G13400_001 Musa acuminata GSMUA_Achr2G13400_001 I 0.739
GSMUA_Achr5G25770_001 Musa acuminata GSMUA_Achr5G25770_001 I 0.833
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.758
GSMUA_Achr7G23710_001 Musa acuminata GSMUA_Achr7G23710_001 I 0.867
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.727
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.747
gw1.7.209.1 Physcomitrella patens gw1.7.209.1 I 0.701
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.737
LBD10 Arabidopsis thaliana AT2G23660 I 0.717
LBD10 Arabidopsis lyrata scaffold_400352.1 I 0.717
LBD36 Arabidopsis thaliana AT5G66870 I 0.758
LBD6 Oryza indica BGIOSGA004955 I 0.929
LBD6 Arabidopsis thaliana AT1G65620 D 0.859
LBD6 Oryza sativa OS01G0889400 I 0.929
LOB Arabidopsis lyrata scaffold_802995.1 I 0.717
LOB Arabidopsis thaliana AT5G63090 D 0.717
LOB Vitis vinifera VIT_17s0000g09010 I 0.727
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.737
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.929
LPERR05G13240 Leersia perrieri LPERR05G13240 I 0.804
Lus10005313.g Linum usitatissimum Lus10005313.g I 0.747
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.838
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.768
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.768
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.717
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.717
MDP0000130659 Malus domestica MDP0000130659 I 0.727
MDP0000133546 Malus domestica MDP0000133546 I 0.717
MDP0000197526 Malus domestica MDP0000197526 I 0.707
MDP0000254288 Malus domestica MDP0000254288 I 0.727
MDP0000273432 Malus domestica MDP0000273432 I 0.859
MDP0000310871 Malus domestica MDP0000310871 I 0.737
MDP0000562305 Malus domestica MDP0000562305 I 0.747
MDP0000643326 Malus domestica MDP0000643326 I 0.848
MDP0000777060 Malus domestica MDP0000777060 I 0.727
mgf003146m Mimulus guttatus mgf003146m I 0.707
mgf004296m Mimulus guttatus mgf004296m I 0.747
mgf014755m Mimulus guttatus mgf014755m I 0.859
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.939
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.949
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.717
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.727
MTR_5g017950 Medicago truncatula MTR_5g017950 I 0.737
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.828
OB01G14220 Oryza brachyantha OB01G14220 I 0.737
OB01G48740 Oryza brachyantha OB01G48740 I 0.939
OB05G24560 Oryza brachyantha OB05G24560 I 0.929
OBART01G04470 Oryza barthii OBART01G04470 I 0.737
OBART01G39990 Oryza barthii OBART01G39990 I 0.929
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.737
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.929
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.919
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.709
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.929
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.737
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.929
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.737
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.929
ONIVA05G17300 Oryza nivara ONIVA05G17300 N 0.717
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.929
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.838
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.727
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.717
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.768
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.737
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.929
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.919
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.737
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.929
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.919
OS01G0169400 Oryza sativa OS01G0169400 I 0.737
OS05G0417000 Oryza sativa OS05G0417000 I 0.919
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.980
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.737
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.737
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.909
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.919
Pavir.J09541 Panicum virgatum Pavir.J09541 I 0.727
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.970
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.737
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.848
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.707
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.758
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.717
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.747
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.768
PK13228.1 Cannabis sativa PK13228.1 I 0.781
PK18922.1 Cannabis sativa PK18922.1 I 0.895
PK26472.1 Cannabis sativa PK26472.1 I 0.707
Pm010483 Prunus mume Pm010483 I 0.737
Pm015649 Prunus mume Pm015649 I 0.707
Pm024312 Prunus mume Pm024312 I 0.727
Pm026450 Prunus mume Pm026450 I 0.758
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.707
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.768
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.788
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.859
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.859
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.727
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.727
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.737
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.707
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.727
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.758
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.859
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.727
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.859
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.859
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.778
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.788
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.788
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.707
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.707
Sb01g014650 Sorghum bicolor Sb01g014650 I 0.707
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.737
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.980
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.909
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.737
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.737
Si002599m.g Setaria italica Si002599m.g I 0.980
Si002632m.g Setaria italica Si002632m.g I 0.737
Si024114m.g Setaria italica Si024114m.g I 0.909
Si036905m.g Setaria italica Si036905m.g I 0.717
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.768
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.707
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.747
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.848
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.707
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.859
TCM_000560 Theobroma cacao TCM_000560 I 0.788
TCM_012190 Theobroma cacao TCM_012190 I 0.727
TCM_024217 Theobroma cacao TCM_024217 I 0.859
Thhalv10000525m.g Eutrema salsugineum Thhalv10000525m.g I 0.707
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.758
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.717
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.859
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.949
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.929
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.969
Traes_1DL_B8551270A Triticum aestivum Traes_1DL_B8551270A I 0.852
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.909
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.939
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.870
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.747
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.747
VIT_07s0197g00040 Vitis vinifera VIT_07s0197g00040 I 0.727
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.707