SapurV1A.0222s0070 (Salix purpurea)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 SapurV1A.0222s0070 T247280_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG

CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.838 0.838
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG

CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.838 0.838
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SapurV1A.0222s0070.1.p LOB 42 140
SapurV1A.0222s0070.2.p LOB 18 116

Links

Other LOB family TFs
Other Salix purpurea TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29729.m002335 Ricinus communis 29729.m002335 I 0.889
29957.m001411 Ricinus communis 29957.m001411 I 0.899
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.869
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.889
LBD13 Arabidopsis thaliana AT2G30340 D 0.838
LBD15 Arabidopsis thaliana AT2G40470 I 0.859
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.798
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.818
Bo3g034980 Brassica oleracea Bo3g034980 I 0.848
Bo4g012620 Brassica oleracea Bo4g012620 I 0.838
Bo4g059520 Brassica oleracea Bo4g059520 I 0.838
Bo4g172950 Brassica oleracea Bo4g172950 I 0.848
Bo4g190140 Brassica oleracea Bo4g190140 I 0.789
Bo4g190210 Brassica oleracea Bo4g190210 I 0.838
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.859
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.838
Bra000188 Brassica rapa Bra000188 I 0.848
Bra004572 Brassica rapa Bra004572 I 0.838
Bra016992 Brassica rapa Bra016992 I 0.848
Bra018320 Brassica rapa Bra018320 I 0.838
Bra021627 Brassica rapa Bra021627 I 0.848
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.788
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.818
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.838
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.859
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.859
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.828
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.889
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.879
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.899
Ca_04126 Cicer arietinum Ca_04126 I 0.838
Ca_12420 Cicer arietinum Ca_12420 I 0.828
Ca_15642 Cicer arietinum Ca_15642 I 0.899
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.848
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.859
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.869
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.828
Cla007391 Citrullus lanatus Cla007391 I 0.848
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.848
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.808
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.889
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.889
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.889
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.879
F775_25790 Aegilops tauschii F775_25790 I 0.808
F775_52636 Aegilops tauschii F775_52636 I 0.798
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.848
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.859
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.869
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.848
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.879
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.869
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.869
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.909
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.889
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.889
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.869
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.869
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.808
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.818
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.859
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.818
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.808
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.818
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.838
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.818
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.798
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.798
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.879
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.879
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.778
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.788
MDP0000278334 Malus domestica MDP0000278334 I 0.848
mgf011471m Mimulus guttatus mgf011471m I 0.859
mgf020556m Mimulus guttatus mgf020556m I 0.818
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.808
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.798
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.838
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.879
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.848
OB01G44400 Oryza brachyantha OB01G44400 I 0.788
OB05G14280 Oryza brachyantha OB05G14280 I 0.737
OBART01G35680 Oryza barthii OBART01G35680 I 0.798
OBART05G04570 Oryza barthii OBART05G04570 I 0.818
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.798
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.818
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.798
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.727
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.798
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.818
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.798
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.818
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.788
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.828
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.869
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.798
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.818
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.798
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.818
OS01G0825000 Oryza sativa OS01G0825000 I 0.798
OS05G0165450 Oryza sativa OS05G0165450 I 0.818
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.818
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.778
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.788
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.828
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.768
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.729
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.869
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.879
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.859
PK03716.1 Cannabis sativa PK03716.1 I 0.824
PK17217.1 Cannabis sativa PK17217.1 I 0.869
PK29334.1 Cannabis sativa PK29334.1 I 0.703
Pm000277 Prunus mume Pm000277 I 0.838
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.848
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 1.000
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.939
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.879
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.848
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.707
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.939
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.808
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.828
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.818
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.818
Si004575m.g Setaria italica Si004575m.g I 0.798
Si012018m.g Setaria italica Si012018m.g I 0.818
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.879
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.879
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.869
TCM_042262 Theobroma cacao TCM_042262 I 0.889
TCM_045438 Theobroma cacao TCM_045438 I 0.889
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.838
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.869
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.798
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.798
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.798
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.798
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.836
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.808
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.818
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.889