SapurV1A.0532s0200 (Salix purpurea)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 SapurV1A.0532s0200 T247293_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND

HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.828 0.828
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG

CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.828 0.828
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.778 0.778
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.778 0.778
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.737 0.737
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SapurV1A.0532s0200.1.p LOB 10 109

Links

Other LOB family TFs
Other Salix purpurea TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LBD30 Arabidopsis thaliana AT4G00220 D 0.737
LBD19 Arabidopsis thaliana AT2G45410 D 0.828
LBD18 Arabidopsis thaliana AT2G45420 D 0.778
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.798
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.717
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.838
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.798
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.737
mgf020735m Mimulus guttatus mgf020735m I 0.848
mgf006429m Mimulus guttatus mgf006429m I 0.737
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.737
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.736
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.727
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.747
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.737
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.727
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.778
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.727
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.798
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.758
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.727
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.758
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.808
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.818
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.778
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.828
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.778
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.716
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.747
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.818
29883.m002035 Ricinus communis 29883.m002035 I 0.707
Pm028642 Prunus mume Pm028642 I 0.737
Pm020629 Prunus mume Pm020629 I 0.717
Pm017936 Prunus mume Pm017936 I 0.818
Pm017935 Prunus mume Pm017935 I 0.889
Cla021625 Citrullus lanatus Cla021625 I 0.727
Cla007069 Citrullus lanatus Cla007069 I 0.848
Ca_20428 Cicer arietinum Ca_20428 I 0.758
Cla007068 Citrullus lanatus Cla007068 I 0.818
Cla002965 Citrullus lanatus Cla002965 I 0.758
30072.m000955 Ricinus communis 30072.m000955 I 0.717
30174.m008897 Ricinus communis 30174.m008897 I 0.899
30174.m008898 Ricinus communis 30174.m008898 I 0.828
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.768
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.747
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.717
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.899
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.828
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.909
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.818
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.727
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.707
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.727
Ca_20429 Cicer arietinum Ca_20429 I 0.727
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.818
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.747
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.717
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.828
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.768
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.768
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.778
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.737
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.791
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.707
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.828
MDP0000429067 Malus domestica MDP0000429067 I 0.889
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.798
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.899
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.717
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.808
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.747
PK25573.1 Cannabis sativa PK25573.1 I 0.869
PK23185.1 Cannabis sativa PK23185.1 I 0.717
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.737
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.798
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.727
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.778
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.808
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.828
MDP0000322059 Malus domestica MDP0000322059 I 0.727
MDP0000254224 Malus domestica MDP0000254224 I 0.747
MDP0000145761 Malus domestica MDP0000145761 I 0.727
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.717
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.717
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.737
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.889
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.737
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.838
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.818
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.707
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.818
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.828
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.778
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.909
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.707
MDP0000131964 Malus domestica MDP0000131964 I 0.707
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.848
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.818
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.828
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.737
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.727
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.879
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.818
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.717
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.737
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.737
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.737
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.788
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.737
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.737
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.717
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.737
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.727
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.889
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.778
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.768
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.899
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.828
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.818
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.818
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.727
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.828
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.727
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.808
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.707
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.818
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.707
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.798
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.838
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.848
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.737
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.778
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.727
Bo4g195510 Brassica oleracea Bo4g195510 I 0.798
Bo4g024620 Brassica oleracea Bo4g024620 I 0.778
Bo4g024610 Brassica oleracea Bo4g024610 I 0.778
Bo2g097560 Brassica oleracea Bo2g097560 I 0.758
Bo1g153580 Brassica oleracea Bo1g153580 I 0.727
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.758
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.818
LBD31 Arabidopsis thaliana AT4G00210 I 0.788
LBD20 Arabidopsis thaliana AT3G03760 I 0.727
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.838
Bo4g195520 Brassica oleracea Bo4g195520 I 0.788
Bo9g002150 Brassica oleracea Bo9g002150 I 0.758
Bo9g002160 Brassica oleracea Bo9g002160 I 0.747
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.808
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.818
Bra040312 Brassica rapa Bra040312 I 0.798
Bra040311 Brassica rapa Bra040311 I 0.788
Bra037323 Brassica rapa Bra037323 I 0.747
Bra037322 Brassica rapa Bra037322 I 0.758
Bra036436 Brassica rapa Bra036436 I 0.727
Bra008514 Brassica rapa Bra008514 I 0.758
Bra004910 Brassica rapa Bra004910 I 0.768
Bra004908 Brassica rapa Bra004908 I 0.768
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.818
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.869
Ca_19598 Cicer arietinum Ca_19598 I 0.848
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.798
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.788
Si015156m.g Setaria italica Si015156m.g I 0.707
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.707
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.828
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.758
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.717
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.737
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.899
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.818
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.727
TCM_004106 Theobroma cacao TCM_004106 I 0.737
TCM_005496 Theobroma cacao TCM_005496 I 0.793
Ca_12213 Cicer arietinum Ca_12213 I 0.727
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.899
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.828
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.758
TRIUR3_25587 Triticum urartu TRIUR3_25587 I 0.707
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.808
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.808
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.808
TCM_025849 Theobroma cacao TCM_025849 I 0.737
TCM_005497 Theobroma cacao TCM_005497 I 0.879
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.737
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.960
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.707
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.758
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.818
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.758
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.818
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.747
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.758
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.818
OBART03G10450 Oryza barthii OBART03G10450 I 0.818
OB10G12360 Oryza brachyantha OB10G12360 I 0.778
OB08G30680 Oryza brachyantha OB08G30680 I 0.707
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.818
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.758
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.818
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.707
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.737
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.872
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.717
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.787
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.737
PGSC0003DMG400012757 Solanum tuberosum PGSC0003DMG400012757 I 0.836
OS10G0162600 Oryza sativa OS10G0162600 I 0.758
OS03G0246900 Oryza sativa OS03G0246900 I 0.818
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.758
OB03G20590 Oryza brachyantha OB03G20590 I 0.727