CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SapurV1A.0532s0200
(
Salix purpurea
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
SapurV1A.0532s0200
T247293_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.828
0.828
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG
CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.828
0.828
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.778
0.778
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.778
0.778
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.737
0.737
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.737
0.737
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SapurV1A.0532s0200.1.p
LOB
10
109
PCGACKFLRKKCVKGCIFAPYFDPDQGTAHFAAVHKVFGASNASKLLLHIPAHKRLDAVVTLCYEALARVRDPVYGCVGHVFTLQQQVLNLQAELACVQA
Links
Other
LOB
family TFs
Other
Salix purpurea
TFs
209 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy