Thhalv10000525m.g (Eutrema salsugineum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Thhalv10000525m.g T247317_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10000525m LOB 5 103

Links

Other LOB family TFs
Other Eutrema salsugineum TFs

157 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra032153 Brassica rapa Bra032153 I 0.960
Bo4g151770 Brassica oleracea Bo4g151770 I 0.960
LBD10 Arabidopsis lyrata scaffold_400352.1 I 0.929
LBD10 Arabidopsis thaliana AT2G23660 I 0.919
Cagra.2475s0001 Capsella grandiflora Cagra.2475s0001 I 0.899
Carubv10025704m.g Capsella rubella Carubv10025704m.g I 0.899
Bostr.27895s0126 Boechera stricta Bostr.27895s0126 N 0.899
PK18922.1 Cannabis sativa PK18922.1 I 0.789
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.788
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.788
Pm026450 Prunus mume Pm026450 I 0.778
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.778
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.768
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.768
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.768
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I 0.768
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.768
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.758
VIT_07s0197g00040 Vitis vinifera VIT_07s0197g00040 I 0.758
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.758
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.758
Pm010483 Prunus mume Pm010483 I 0.758
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.758
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.758
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.758
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.758
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.758
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.758
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.758
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.758
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.758
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.758
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.747
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.747
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.747
TCM_000560 Theobroma cacao TCM_000560 I 0.747
Bo2g167820 Brassica oleracea Bo2g167820 I 0.747
MDP0000310871 Malus domestica MDP0000310871 I 0.747
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.747
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.747
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.747
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.747
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.747
LBD36 Arabidopsis thaliana AT5G66870 I 0.747
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.747
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.737
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.737
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.737
Cla020438 Citrullus lanatus Cla020438 I 0.737
MDP0000777060 Malus domestica MDP0000777060 I 0.737
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.737
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.737
29676.m001633 Ricinus communis 29676.m001633 I 0.737
MDP0000562305 Malus domestica MDP0000562305 I 0.737
cassava16840.m1 Manihot esculenta cassava16840.m1 I 0.737
Bo7g064360 Brassica oleracea Bo7g064360 I 0.737
MDP0000197526 Malus domestica MDP0000197526 I 0.737
Bra012112 Brassica rapa Bra012112 I 0.737
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.727
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.727
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.727
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.727
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.727
Ca_20200 Cicer arietinum Ca_20200 I 0.727
Cla005851 Citrullus lanatus Cla005851 I 0.727
mgf004296m Mimulus guttatus mgf004296m I 0.727
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.727
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.727
29929.m004500 Ricinus communis 29929.m004500 I 0.717
AS2 Vitis vinifera VIT_00s0340g00090 I 0.717
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.717
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.717
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.717
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.717
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.717
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.717
mgf014755m Mimulus guttatus mgf014755m I 0.717
VIT_07s0197g00030 Vitis vinifera VIT_07s0197g00030 I 0.717
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.717
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.717
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.717
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.717
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.717
GRMZM2G362627 Zea mays GRMZM2G362627 I 0.717
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.717
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.717
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.717
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.717
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.717
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.717
LBD6 Arabidopsis thaliana AT1G65620 D 0.717
BGIOSGA013119 Oryza indica BGIOSGA013119 I 0.717
PK21617.1 Cannabis sativa PK21617.1 I 0.717
Bra039733 Brassica rapa Bra039733 I 0.717
Bo2g051420 Brassica oleracea Bo2g051420 I 0.717
TCM_024217 Theobroma cacao TCM_024217 I 0.717
OGLUM03G26820 Oryza glumaepatula OGLUM03G26820 I 0.717
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.717
ORUFI03G26840 Oryza rufipogon ORUFI03G26840 I 0.717
Lus10005313.g Linum usitatissimum Lus10005313.g I 0.717
OS03G0612400 Oryza sativa OS03G0612400 I 0.717
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.717
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.717
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.717
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.717
ONIVA11G15310 Oryza nivara ONIVA11G15310 I 0.717
MDP0000273432 Malus domestica MDP0000273432 I 0.717
ORGLA03G0240600 Oryza glaberrima ORGLA03G0240600 I 0.717
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.717
Si002599m.g Setaria italica Si002599m.g I 0.717
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.717
Lus10009337.g Linum usitatissimum Lus10009337.g I 0.707
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.707
Pavir.J09541 Panicum virgatum Pavir.J09541 I 0.707
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.707
Lus10019633.g Linum usitatissimum Lus10019633.g I 0.707
MDP0000643326 Malus domestica MDP0000643326 I 0.707
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.707
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.707
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.707
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.707
MTR_5g017950 Medicago truncatula MTR_5g017950 I 0.707
OB01G48740 Oryza brachyantha OB01G48740 I 0.707
OBART01G39990 Oryza barthii OBART01G39990 I 0.707
OB05G24560 Oryza brachyantha OB05G24560 I 0.707
OB03G34080 Oryza brachyantha OB03G34080 I 0.707
GRMZM2G154320 Zea mays GRMZM2G154320 N 0.707
GRMZM2G133806 Zea mays GRMZM2G133806 I 0.707
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.707
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.707
LBD6 Oryza indica BGIOSGA004955 I 0.707
F775_20715 Aegilops tauschii F775_20715 I 0.707
F775_21760 Aegilops tauschii F775_21760 I 0.707
GLYMA11G06210 Glycine max GLYMA11G06210 I 0.707
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.707
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.707
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.707
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.707
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.707
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.707
OS05G0417000 Oryza sativa OS05G0417000 I 0.707
Si024114m.g Setaria italica Si024114m.g I 0.707
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.707
Ca_02125 Cicer arietinum Ca_02125 I 0.707
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.707
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.707
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.707
LBD6 Oryza sativa OS01G0889400 I 0.707
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.707
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.707
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.707
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.707
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.707
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.707
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.707
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.707
gw1.7.209.1 Physcomitrella patens gw1.7.209.1 I 0.701