Thhalv10001778m.g (Eutrema salsugineum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Thhalv10001778m.g T247328_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND

HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.919 0.919
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG

CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.919 0.919
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10001778m LOB 16 115

Links

Other LOB family TFs
Other Eutrema salsugineum TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LBD19 Arabidopsis thaliana AT2G45410 D 0.919
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.727
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.747
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.778
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.737
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.707
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.701
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.707
mgf020735m Mimulus guttatus mgf020735m I 0.788
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.727
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.788
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.808
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.929
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.919
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.788
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.737
30174.m008898 Ricinus communis 30174.m008898 I 0.747
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.727
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.727
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.747
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.808
Ca_19598 Cicer arietinum Ca_19598 I 0.778
Ca_20428 Cicer arietinum Ca_20428 I 0.707
Ca_20429 Cicer arietinum Ca_20429 I 0.708
Cla007068 Citrullus lanatus Cla007068 I 0.737
Cla007069 Citrullus lanatus Cla007069 I 0.768
Pm017935 Prunus mume Pm017935 I 0.798
Pm017936 Prunus mume Pm017936 I 0.737
30174.m008897 Ricinus communis 30174.m008897 I 0.778
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.798
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.788
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.747
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.736
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.717
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.747
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.758
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.778
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.747
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.808
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.768
PK25573.1 Cannabis sativa PK25573.1 I 0.808
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.707
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.769
MDP0000429067 Malus domestica MDP0000429067 I 0.798
MDP0000254224 Malus domestica MDP0000254224 I 0.717
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.778
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.919
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.747
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.768
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.737
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.798
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.798
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.722
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.798
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.737
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.808
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.768
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.747
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.717
TCM_005497 Theobroma cacao TCM_005497 I 0.768
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.899
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.717
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.727
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.808
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.727
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.747
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.747
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.727
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.747
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.747
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.737
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.737
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.727
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.818
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.707
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.737
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.778
LBD31 Arabidopsis thaliana AT4G00210 I 0.788
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.737
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.717
Bo4g024610 Brassica oleracea Bo4g024610 I 0.899
Bo4g195510 Brassica oleracea Bo4g195510 I 0.843
Bo4g195520 Brassica oleracea Bo4g195520 I 0.707
Bo9g002150 Brassica oleracea Bo9g002150 I 0.737
Bra004908 Brassica rapa Bra004908 I 0.889
Bra037322 Brassica rapa Bra037322 I 0.737
Bra040311 Brassica rapa Bra040311 I 0.707
Bra040312 Brassica rapa Bra040312 I 0.859
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.707
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.758
OS03G0246900 Oryza sativa OS03G0246900 I 0.737
OS10G0162600 Oryza sativa OS10G0162600 I 0.717
PGSC0003DMG400012757 Solanum tuberosum PGSC0003DMG400012757 I 0.740
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.702
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.734
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.808
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.737
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.798
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.747
scaffold_403397.1 Arabidopsis lyrata scaffold_403397.1 I 0.790
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.707
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.737
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.717
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.737
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.717
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.717
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.788
OB10G12360 Oryza brachyantha OB10G12360 I 0.737
OBART03G10450 Oryza barthii OBART03G10450 I 0.737
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.737
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.717
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.722
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.737
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.717
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.737
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.717
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.737
TCM_005496 Theobroma cacao TCM_005496 I 0.707