Thhalv10001791m.g (Eutrema salsugineum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Thhalv10001791m.g T247329_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
1.000 1.000
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
1.000 1.000
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.828 0.828
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.828 0.828
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.747 0.747
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.747 0.747
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.747 0.747
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND

HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.747 0.747
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG

CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.747 0.747
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10001791m LOB 36 135

Links

Other LOB family TFs
Other Eutrema salsugineum TFs

360 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_006_00360 Aquilegia coerulea Aquca_006_00360 I 0.000
AtbZIP3 Arabidopsis lyrata fgenesh2_kg.6__1562__AT5G15830.1 I 0.000
ATBZIP42 Arabidopsis thaliana AT3G30530 D 0.000
Bostr.2902s0318 Boechera stricta Bostr.2902s0318 I 0.000
BRADI4G32920 Brachypodium distachyon BRADI4G32920 I 0.000
Bo9g163740 Brassica oleracea Bo9g163740 I 0.000
Bo3g010750 Brassica oleracea Bo3g010750 I 0.000
Bo3g010620 Brassica oleracea Bo3g010620 I 0.000
Bo2g012800 Brassica oleracea Bo2g012800 I 0.000
Bra006324 Brassica rapa Bra006324 I 0.000
Bra008670 Brassica rapa Bra008670 I 0.000
Bra023540 Brassica rapa Bra023540 I 0.000
Cagra.6845s0027 Capsella grandiflora Cagra.6845s0027 I 0.000
Carubv10002068m.g Capsella rubella Carubv10002068m.g I 0.000
Cla020641 Citrullus lanatus Cla020641 I 0.000
Ciclev10032777m.g Citrus clementina Ciclev10032777m.g I 0.000
orange1.1g043159m.g Citrus sinensis orange1.1g043159m.g I 0.000
Cucsa.284240 Cucumis sativus Cucsa.284240 I 0.000
Eucgr.I02090 Eucalyptus grandis Eucgr.I02090 I 0.000
Thhalv10015835m.g Eutrema salsugineum Thhalv10015835m.g I 0.000
LPERR08G15570 Leersia perrieri LPERR08G15570 I 0.000
GSMUA_Achr6G36230_001 Musa acuminata GSMUA_Achr6G36230_001 I 0.000
OBART08G18720 Oryza barthii OBART08G18720 I 0.000
ORGLA08G0162900 Oryza glaberrima ORGLA08G0162900 I 0.000
OGLUM08G19690 Oryza glumaepatula OGLUM08G19690 I 0.000
BGIOSGA026766 Oryza indica BGIOSGA026766 I 0.000
OMERI08G14760 Oryza meridionalis OMERI08G14760 I 0.000
ONIVA08G20730 Oryza nivara ONIVA08G20730 I 0.000
ORUFI08G08020 Oryza rufipogon ORUFI08G08020 I 0.000
OS08G0487100 Oryza sativa OS08G0487100 I 0.000
Pavir.Bb02514 Panicum virgatum Pavir.Bb02514 I 0.000
Pavir.Ba01782 Panicum virgatum Pavir.Ba01782 I 0.000
Si031238m.g Setaria italica Si031238m.g I 0.000
Si019897m.g Setaria italica Si019897m.g I 0.000
GRMZM2G020799 Zea mays GRMZM2G020799 I 0.000
GRMZM2G144480 Zea mays GRMZM2G144480 I 0.000