Thhalv10005120m.g (Eutrema salsugineum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Thhalv10005120m.g T247333_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.808 0.808
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10005120m LOB 12 110

Links

Other LOB family TFs
Other Eutrema salsugineum TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD25 Arabidopsis thaliana AT3G27650 I 0.990
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.980
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.980
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.980
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.970
Bra039072 Brassica rapa Bra039072 I 0.960
Bo9g008330 Brassica oleracea Bo9g008330 I 0.960
Bra025294 Brassica rapa Bra025294 I 0.960
Bra033019 Brassica rapa Bra033019 I 0.939
Bo2g144870 Brassica oleracea Bo2g144870 I 0.939
Bo7g085860 Brassica oleracea Bo7g085860 I 0.929
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.879
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.879
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.869
MDP0000848210 Malus domestica MDP0000848210 I 0.869
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.869
TCM_016952 Theobroma cacao TCM_016952 I 0.869
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.869
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.869
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.869
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.859
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.859
Cla010600 Citrullus lanatus Cla010600 I 0.859
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.859
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.859
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.859
Pm015649 Prunus mume Pm015649 I 0.859
PK26472.1 Cannabis sativa PK26472.1 I 0.859
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.859
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.859
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.859
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.859
29917.m001993 Ricinus communis 29917.m001993 I 0.859
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.859
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.859
Cla017388 Citrullus lanatus Cla017388 I 0.848
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.848
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.848
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.848
Ca_24372 Cicer arietinum Ca_24372 I 0.848
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.848
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.848
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.848
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.838
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.838
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.828
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.828
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.828
30147.m013890 Ricinus communis 30147.m013890 I 0.818
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.818
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.818
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.818
mgf003146m Mimulus guttatus mgf003146m I 0.818
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.808
MDP0000254288 Malus domestica MDP0000254288 I 0.808
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.808
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.808
Ca_07463 Cicer arietinum Ca_07463 I 0.808
LOB Vitis vinifera VIT_17s0000g09010 I 0.808
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.808
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.808
Pm024312 Prunus mume Pm024312 I 0.808
Cla019510 Citrullus lanatus Cla019510 I 0.808
MDP0000130659 Malus domestica MDP0000130659 I 0.808
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.808
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.808
Bo3g104760 Brassica oleracea Bo3g104760 I 0.808
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.808
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.808
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.808
LOB Arabidopsis thaliana AT5G63090 D 0.808
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.808
Bra038606 Brassica rapa Bra038606 I 0.808
TCM_012190 Theobroma cacao TCM_012190 I 0.808
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.808
mgf024603m Mimulus guttatus mgf024603m I 0.808
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.808
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.808
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.808
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.808
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.808
OS01G0169400 Oryza sativa OS01G0169400 I 0.808
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.808
LOB Arabidopsis lyrata scaffold_802995.1 I 0.808
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.808
Si002632m.g Setaria italica Si002632m.g I 0.808
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.808
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.808
OB01G14220 Oryza brachyantha OB01G14220 I 0.808
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.808
OBART01G04470 Oryza barthii OBART01G04470 I 0.808
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.808
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.808
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.808
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.808
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.808
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.808
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.808
Bo9g017470 Brassica oleracea Bo9g017470 I 0.798
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.798
F775_25656 Aegilops tauschii F775_25656 I 0.798
Ca_08824 Cicer arietinum Ca_08824 I 0.798
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.798
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.798
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.788
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.788
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.788
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.788
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.788
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.788
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.788
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.788
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.788
F775_33210 Aegilops tauschii F775_33210 I 0.781
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.778
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.778
PK21510.1 Cannabis sativa PK21510.1 I 0.778
Bra035860 Brassica rapa Bra035860 I 0.778
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.778
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.778
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.778
PK18922.1 Cannabis sativa PK18922.1 I 0.772
mgf016361m Mimulus guttatus mgf016361m I 0.768
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.768
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.758
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.758
Cla003499 Citrullus lanatus Cla003499 I 0.758
PK29334.1 Cannabis sativa PK29334.1 I 0.750
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.747
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.738
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.737
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.729
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.727
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.727
AS2 Vitis vinifera VIT_00s0340g00090 I 0.727
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.727
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.727
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.727
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.727
Ca_20200 Cicer arietinum Ca_20200 I 0.727
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.727
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.717
MDP0000643326 Malus domestica MDP0000643326 I 0.717
MDP0000273432 Malus domestica MDP0000273432 I 0.717
PK21617.1 Cannabis sativa PK21617.1 I 0.717
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.717
Cla005851 Citrullus lanatus Cla005851 I 0.717
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.717
mgf014755m Mimulus guttatus mgf014755m I 0.717
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.717
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.717
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.717
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.717
Pm026450 Prunus mume Pm026450 I 0.717
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.717
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.717
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.717
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.717
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.717
Bo7g064360 Brassica oleracea Bo7g064360 I 0.707
Bo2g167820 Brassica oleracea Bo2g167820 I 0.707
Bo2g051420 Brassica oleracea Bo2g051420 I 0.707
Si036905m.g Setaria italica Si036905m.g I 0.707
LBD6 Arabidopsis thaliana AT1G65620 D 0.707
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.707
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.707
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.707
Bra039733 Brassica rapa Bra039733 I 0.707
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.707
Bra012112 Brassica rapa Bra012112 I 0.707
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.707
29929.m004500 Ricinus communis 29929.m004500 I 0.707
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.707
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.707
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.707
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.707
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.707
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.707
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.707
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.707
TCM_024217 Theobroma cacao TCM_024217 I 0.707
TCM_000560 Theobroma cacao TCM_000560 I 0.707
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.707
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.707
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.707
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.707
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.707
PK17019.1 Cannabis sativa PK17019.1 I 0.706