Thhalv10009386m.g (Eutrema salsugineum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Thhalv10009386m.g T247340_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.747 0.747
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10009386m LOB 14 112

Links

Other LOB family TFs
Other Eutrema salsugineum TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD3 Arabidopsis lyrata Al_scaffold_0001_1711 I 0.980
Bra026042 Brassica rapa Bra026042 I 0.949
Bra026716 Brassica rapa Bra026716 I 0.949
Bo8g105450 Brassica oleracea Bo8g105450 I 0.949
Bostr.7128s0261 Boechera stricta Bostr.7128s0261 I 0.949
LBD3 Arabidopsis thaliana AT1G16530 I 0.949
Cagra.0824s0026 Capsella grandiflora Cagra.0824s0026 I 0.939
Bo5g021980 Brassica oleracea Bo5g021980 I 0.929
Cla013678 Citrullus lanatus Cla013678 I 0.798
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.798
MDP0000268890 Malus domestica MDP0000268890 I 0.798
PK11564.1 Cannabis sativa PK11564.1 I 0.798
Pm011040 Prunus mume Pm011040 I 0.798
TCM_032557 Theobroma cacao TCM_032557 I 0.798
MDP0000284409 Malus domestica MDP0000284409 I 0.798
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.798
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.798
30169.m006340 Ricinus communis 30169.m006340 I 0.798
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.798
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.798
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.788
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.788
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.788
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.788
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.788
Ca_06548 Cicer arietinum Ca_06548 I 0.788
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.788
MDP0000121203 Malus domestica MDP0000121203 I 0.788
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.788
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.788
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.788
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.788
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.788
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.788
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.788
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.788
Ca_13575 Cicer arietinum Ca_13575 I 0.788
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.788
TCM_029315 Theobroma cacao TCM_029315 I 0.778
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.778
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.778
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.778
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.778
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.778
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.778
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.778
PK24688.1 Cannabis sativa PK24688.1 I 0.778
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.778
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.778
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.778
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.778
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.778
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.778
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.778
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.778
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.778
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.778
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.778
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.768
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.768
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.768
Solyc12g100150.1 Solanum lycopersicum Solyc12g100150.1 I 0.758
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.758
chr3.CM0176.110.nc Lotus japonicus chr3.CM0176.110.nc I 0.758
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.758
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.758
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.758
mgf026046m Mimulus guttatus mgf026046m I 0.758
Ciclev10006208m.g Citrus clementina Ciclev10006208m.g I 0.758
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.758
orange1.1g041989m.g Citrus sinensis orange1.1g041989m.g I 0.758
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.750
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.747
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.747
Bo7g041000 Brassica oleracea Bo7g041000 I 0.747
Bra014907 Brassica rapa Bra014907 I 0.747
LBD4 Arabidopsis thaliana AT1G31320 D 0.747
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.747
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.747
Cla009336 Citrullus lanatus Cla009336 I 0.747
mgf022958m Mimulus guttatus mgf022958m I 0.747
Cucsa.236600 Cucumis sativus Cucsa.236600 I 0.747
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.747
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.737
PGSC0003DMG402023851 Solanum tuberosum PGSC0003DMG402023851 I 0.737
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.737
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.737
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.737
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.737
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.737
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.731
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.727
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.727
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.727
GSMUA_Achr2G13170_001 Musa acuminata GSMUA_Achr2G13170_001 I 0.727
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.727
Bra021612 Brassica rapa Bra021612 I 0.727
Si037583m.g Setaria italica Si037583m.g I 0.727
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.727
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.727
Bo4g170770 Brassica oleracea Bo4g170770 I 0.727
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I 0.727
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.717
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.717
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.717
Bostr.29246s0022 Boechera stricta Bostr.29246s0022 I 0.717
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.717
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.717
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.717
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.717
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.717
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.717
Bra018335 Brassica rapa Bra018335 I 0.717
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.717
POPTR_0001s28840 Populus trichocarpa POPTR_0001s28840 I 0.717
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.717
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.717
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.717
GLYMA14G06140 Glycine max GLYMA14G06140 I 0.717
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.717
PK21617.1 Cannabis sativa PK21617.1 I 0.717
GSMUA_Achr7G00880_001 Musa acuminata GSMUA_Achr7G00880_001 I 0.717
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.717
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.717
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.717
Bo4g059700 Brassica oleracea Bo4g059700 I 0.717
Ca_12450 Cicer arietinum Ca_12450 I 0.717
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.717
Cla005598 Citrullus lanatus Cla005598 I 0.717
LBD12 Arabidopsis thaliana AT2G30130 I 0.717
29729.m002278 Ricinus communis 29729.m002278 I 0.717
Pm018982 Prunus mume Pm018982 I 0.717
Lus10031855.g Linum usitatissimum Lus10031855.g I 0.717
MDP0000265429 Malus domestica MDP0000265429 I 0.717
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I 0.717
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.717
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.717
MDP0000861160 Malus domestica MDP0000861160 I 0.717
TCM_042447 Theobroma cacao TCM_042447 I 0.717
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.707
Pavir.Ca01985 Panicum virgatum Pavir.Ca01985 I 0.707
Lus10007525.g Linum usitatissimum Lus10007525.g I 0.707
Lus10031285.g Linum usitatissimum Lus10031285.g I 0.707
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.707
Pavir.J21476 Panicum virgatum Pavir.J21476 I 0.707
Pavir.J22399 Panicum virgatum Pavir.J22399 I 0.707
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.707
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.707
ONIVA05G13090 Oryza nivara ONIVA05G13090 I 0.707
OMERI05G11330 Oryza meridionalis OMERI05G11330 I 0.707
OGLUM05G13250 Oryza glumaepatula OGLUM05G13250 I 0.707
OPUNC05G10670 Oryza punctata OPUNC05G10670 I 0.707
ORGLA05G0108100 Oryza glaberrima ORGLA05G0108100 I 0.707
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.707
OS05G0346800 Oryza sativa OS05G0346800 I 0.707
ORUFI05G13610 Oryza rufipogon ORUFI05G13610 I 0.707
OBART05G12620 Oryza barthii OBART05G12620 I 0.707
OB05G20740 Oryza brachyantha OB05G20740 I 0.707
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.707
BGIOSGA018245 Oryza indica BGIOSGA018245 I 0.707
BGIOSGA018244 Oryza indica BGIOSGA018244 I 0.707
GSMUA_Achr5G02190_001 Musa acuminata GSMUA_Achr5G02190_001 I 0.707
GSMUA_Achr5G29470_001 Musa acuminata GSMUA_Achr5G29470_001 I 0.707
MLOC_54949 Hordeum vulgare MLOC_54949 I 0.707
LPERR05G10020 Leersia perrieri LPERR05G10020 I 0.707
GSMUA_Achr8G02800_001 Musa acuminata GSMUA_Achr8G02800_001 I 0.707
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.707
PRUPE_ppa012275mg Prunus persica PRUPE_ppa012275mg I 0.707
Cucsa.144430 Cucumis sativus Cucsa.144430 I 0.707
Pm000193 Prunus mume Pm000193 I 0.707
Cla007354 Citrullus lanatus Cla007354 I 0.707
Ca_08998 Cicer arietinum Ca_08998 I 0.707
e_gw1.192.35.1 Physcomitrella patens e_gw1.192.35.1 I 0.707
mgf018189m Mimulus guttatus mgf018189m I 0.707
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.707
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.707
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.707
ASL5 Vitis vinifera VIT_06s0004g07200 I 0.707
TRIUR3_11841 Triticum urartu TRIUR3_11841 I 0.707
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.707
Si024229m.g Setaria italica Si024229m.g I 0.707
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.707
TCM_042212 Theobroma cacao TCM_042212 I 0.707
Traes_1AL_DB7593004 Triticum aestivum Traes_1AL_DB7593004 I 0.707
Traes_4DS_DA077BB06 Triticum aestivum Traes_4DS_DA077BB06 I 0.707
Traes_4BS_E9E0C550B Triticum aestivum Traes_4BS_E9E0C550B I 0.707
Traes_1BL_04EFBAECF Triticum aestivum Traes_1BL_04EFBAECF I 0.707
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.707