Thhalv10017267m.g (Eutrema salsugineum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Thhalv10017267m.g T247349_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.745 0.745
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.745 0.745
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10017267m LOB 13 106

Links

Other LOB family TFs
Other Eutrema salsugineum TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g059700 Brassica oleracea Bo4g059700 I 0.919
Bra018335 Brassica rapa Bra018335 I 0.919
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.919
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.919
LBD12 Arabidopsis thaliana AT2G30130 I 0.919
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.915
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.915
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.915
PK17019.1 Cannabis sativa PK17019.1 I 0.912
Bostr.29246s0022 Boechera stricta Bostr.29246s0022 I 0.909
Bo4g170770 Brassica oleracea Bo4g170770 I 0.909
Bra021612 Brassica rapa Bra021612 I 0.909
MDP0000265429 Malus domestica MDP0000265429 I 0.904
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.904
LjSGA_062507.1.1 Lotus japonicus LjSGA_062507.1.1 I 0.897
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.894
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.894
mgf018189m Mimulus guttatus mgf018189m I 0.894
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.894
Bra022780 Brassica rapa Bra022780 I 0.889
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.889
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.889
Bo3g024350 Brassica oleracea Bo3g024350 I 0.889
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.883
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.879
TCM_042447 Theobroma cacao TCM_042447 I 0.879
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.879
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.879
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.879
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.879
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.879
29729.m002278 Ricinus communis 29729.m002278 I 0.879
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.872
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.872
GLYMA11G29450 Glycine max GLYMA11G29450 I 0.872
Si024229m.g Setaria italica Si024229m.g I 0.872
PDK_20s1810211g001 Phoenix dactylifera PDK_20s1810211g001 I 0.872
Pm018982 Prunus mume Pm018982 I 0.869
TCM_042212 Theobroma cacao TCM_042212 I 0.869
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.869
ASL5 Vitis vinifera VIT_06s0004g07200 I 0.869
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.862
Cucsa.144430 Cucumis sativus Cucsa.144430 I 0.859
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.859
Cla007354 Citrullus lanatus Cla007354 I 0.859
Eucgr.G03089 Eucalyptus grandis Eucgr.G03089 I 0.859
POPTR_0001s28840 Populus trichocarpa POPTR_0001s28840 I 0.859
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.859
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.859
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.859
Lus10031285.g Linum usitatissimum Lus10031285.g I 0.859
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.859
PGSC0003DMG400023939 Solanum tuberosum PGSC0003DMG400023939 I 0.851
GSMUA_Achr8G02800_001 Musa acuminata GSMUA_Achr8G02800_001 I 0.851
Ca_13388 Cicer arietinum Ca_13388 I 0.851
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.851
orange1.1g038565m.g Citrus sinensis orange1.1g038565m.g I 0.849
PRUPE_ppa012275mg Prunus persica PRUPE_ppa012275mg I 0.848
GLYMA14G06140 Glycine max GLYMA14G06140 I 0.848
Lus10031855.g Linum usitatissimum Lus10031855.g I 0.848
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I 0.848
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.848
MDP0000155138 Malus domestica MDP0000155138 I 0.848
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I 0.848
Gorai.004G234100 Gossypium raimondii Gorai.004G234100 I 0.848
Sb08g000575 Sorghum bicolor Sb08g000575 I 0.843
Pm000193 Prunus mume Pm000193 I 0.838
GSMUA_Achr9G18030_001 Musa acuminata GSMUA_Achr9G18030_001 I 0.838
MDP0000194766 Malus domestica MDP0000194766 I 0.838
SapurV1A.0566s0080 Salix purpurea SapurV1A.0566s0080 I 0.838
mgf019461m Mimulus guttatus mgf019461m I 0.838
MDP0000861160 Malus domestica MDP0000861160 I 0.838
PDK_20s1728161g001 Phoenix dactylifera PDK_20s1728161g001 I 0.838
Sb05g000550 Sorghum bicolor Sb05g000550 I 0.836
Si011647m.g Setaria italica Si011647m.g I 0.830
Traes_1BL_04EFBAECF Triticum aestivum Traes_1BL_04EFBAECF I 0.828
GSMUA_Achr6G15660_001 Musa acuminata GSMUA_Achr6G15660_001 I 0.828
Traes_1AL_DB7593004 Triticum aestivum Traes_1AL_DB7593004 I 0.828
MLOC_54949 Hordeum vulgare MLOC_54949 I 0.828
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.828
Lus10017431.g Linum usitatissimum Lus10017431.g I 0.819
ORGLA05G0108100 Oryza glaberrima ORGLA05G0108100 I 0.818
Pavir.J21476 Panicum virgatum Pavir.J21476 I 0.818
OB05G20740 Oryza brachyantha OB05G20740 I 0.818
OS05G0346800 Oryza sativa OS05G0346800 I 0.818
OBART05G12620 Oryza barthii OBART05G12620 I 0.818
ORUFI05G13610 Oryza rufipogon ORUFI05G13610 I 0.818
BGIOSGA018244 Oryza indica BGIOSGA018244 I 0.818
OPUNC05G10670 Oryza punctata OPUNC05G10670 I 0.818
BGIOSGA018245 Oryza indica BGIOSGA018245 I 0.818
OGLUM05G13250 Oryza glumaepatula OGLUM05G13250 I 0.818
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.818
Pavir.J22399 Panicum virgatum Pavir.J22399 I 0.818
GLYMA18G06530 Glycine max GLYMA18G06530 I 0.818
Pavir.Ca01985 Panicum virgatum Pavir.Ca01985 I 0.818
OMERI05G11330 Oryza meridionalis OMERI05G11330 I 0.818
LPERR05G10020 Leersia perrieri LPERR05G10020 I 0.818
ONIVA05G13090 Oryza nivara ONIVA05G13090 I 0.818
Ca_08998 Cicer arietinum Ca_08998 I 0.818
Solyc06g050950.2 Solanum lycopersicum Solyc06g050950.2 I 0.808
GSMUA_Achr3G10050_001 Musa acuminata GSMUA_Achr3G10050_001 I 0.808
Lus10007525.g Linum usitatissimum Lus10007525.g I 0.808
Ca_12450 Cicer arietinum Ca_12450 I 0.808
GLYMA18G02780 Glycine max GLYMA18G02780 I 0.798
GSMUA_Achr5G29470_001 Musa acuminata GSMUA_Achr5G29470_001 I 0.798
MTR_3g031660 Medicago truncatula MTR_3g031660 I 0.788
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.788
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.788
Gorai.009G112900 Gossypium raimondii Gorai.009G112900 I 0.788
PDK_20s1342451g001 Phoenix dactylifera PDK_20s1342451g001 I 0.788
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.787
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.787
GSMUA_Achr10G14880_001 Musa acuminata GSMUA_Achr10G14880_001 I 0.778
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.778
Si026864m.g Setaria italica Si026864m.g I 0.778
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.778
GSMUA_Achr10G13050_001 Musa acuminata GSMUA_Achr10G13050_001 I 0.778
mgf022958m Mimulus guttatus mgf022958m I 0.777
Cla013598 Citrullus lanatus Cla013598 I 0.777
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.777
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.777
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.777
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.768
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.768
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.766
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.766
MDP0000268890 Malus domestica MDP0000268890 I 0.766
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.766
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.766
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.766
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.766
MDP0000121203 Malus domestica MDP0000121203 I 0.766
OS03G0659700 Oryza sativa OS03G0659700 I 0.766
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.766
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.766
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.766
MDP0000284409 Malus domestica MDP0000284409 I 0.766
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.766
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.766
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.766
Pm011040 Prunus mume Pm011040 I 0.766
30169.m006340 Ricinus communis 30169.m006340 I 0.766
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.766
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.766
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.766
TRIUR3_27421 Triticum urartu TRIUR3_27421 I 0.761
F775_24149 Aegilops tauschii F775_24149 I 0.761
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.758
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.758
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I 0.758
F775_08326 Aegilops tauschii F775_08326 I 0.758
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.755
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.755
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.755
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.755
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.755
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.755
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.755
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.755
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.755
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.750
OBART02G29970 Oryza barthii OBART02G29970 N 0.750
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.747
OBART03G28270 Oryza barthii OBART03G28270 I 0.747
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.747
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.747
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.747
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.747
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.745
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.745
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.737
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.737
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.737
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.737
cassava2872.m1 Manihot esculenta cassava2872.m1 I 0.737
Ca_06548 Cicer arietinum Ca_06548 I 0.737
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.737
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.737
TCM_029315 Theobroma cacao TCM_029315 I 0.737
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.737
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.737
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.737
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.734
ORUFI01G46340 Oryza rufipogon ORUFI01G46340 I 0.733
Cla013678 Citrullus lanatus Cla013678 I 0.727
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.727
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.727
PK11564.1 Cannabis sativa PK11564.1 I 0.727
Cucsa.236600 Cucumis sativus Cucsa.236600 I 0.727
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.727
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.727
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.727
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.727
Cla009336 Citrullus lanatus Cla009336 I 0.727
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.727
Si037583m.g Setaria italica Si037583m.g I 0.727
Ca_13575 Cicer arietinum Ca_13575 I 0.727
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.727
OMERI01G39870 Oryza meridionalis OMERI01G39870 I 0.720
PK29334.1 Cannabis sativa PK29334.1 I 0.719
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.718
TCM_032557 Theobroma cacao TCM_032557 I 0.717
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.717
PK24688.1 Cannabis sativa PK24688.1 I 0.717
Cucsa.139480 Cucumis sativus Cucsa.139480 N 0.717
mgf026046m Mimulus guttatus mgf026046m I 0.717
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.717
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.717
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.717
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.717
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.707
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.707
ORGLA01G0366500 Oryza glaberrima ORGLA01G0366500 I 0.707
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.707
Bra014907 Brassica rapa Bra014907 I 0.707
LBD4 Arabidopsis thaliana AT1G31320 D 0.707
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.707
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.707
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.707
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.707
ONIVA08G12870 Oryza nivara ONIVA08G12870 I 0.704
BGIOSGA036857 Oryza indica BGIOSGA036857 I 0.702
BGIOSGA034653 Oryza indica BGIOSGA034653 I 0.702
ORGLA11G0005800 Oryza glaberrima ORGLA11G0005800 I 0.702
ORGLA02G0255200 Oryza glaberrima ORGLA02G0255200 N 0.702
OS11G0106900 Oryza sativa OS11G0106900 I 0.702
ORUFI11G00360 Oryza rufipogon ORUFI11G00360 N 0.702
mgf024603m Mimulus guttatus mgf024603m I 0.702
OS12G0106200 Oryza sativa OS12G0106200 I 0.702