Thhalv10028924m.g (Eutrema salsugineum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Thhalv10028924m.g T247369_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.768 0.768
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.768 0.768
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.737 0.737
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10028924m LOB 24 123

Links

Other LOB family TFs
Other Eutrema salsugineum TFs

189 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.939
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.929
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.929
LBD31 Arabidopsis thaliana AT4G00210 I 0.889
Bra037322 Brassica rapa Bra037322 I 0.869
Bo9g002150 Brassica oleracea Bo9g002150 I 0.869
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.828
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.824
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.818
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.818
PK25573.1 Cannabis sativa PK25573.1 I 0.818
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.814
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.808
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.808
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.808
MDP0000429067 Malus domestica MDP0000429067 I 0.808
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.808
LBD31 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002970 N 0.808
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.808
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.808
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.808
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.798
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.798
Ca_19598 Cicer arietinum Ca_19598 I 0.798
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.798
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.798
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.798
TCM_005497 Theobroma cacao TCM_005497 I 0.798
Pm017935 Prunus mume Pm017935 I 0.798
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.798
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.798
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.798
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.798
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.798
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.789
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.788
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.788
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.788
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.788
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.788
mgf020735m Mimulus guttatus mgf020735m I 0.788
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.788
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.788
Ca_20429 Cicer arietinum Ca_20429 I 0.787
OS03G0246900 Oryza sativa OS03G0246900 I 0.778
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.778
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.778
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.778
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.778
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.778
OS10G0162600 Oryza sativa OS10G0162600 I 0.778
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.778
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.778
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.778
30174.m008897 Ricinus communis 30174.m008897 I 0.778
30174.m008898 Ricinus communis 30174.m008898 I 0.778
Cla007069 Citrullus lanatus Cla007069 I 0.778
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.778
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.778
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.778
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.778
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.778
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.778
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.778
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.778
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.778
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.778
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.778
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.778
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.778
OB10G12360 Oryza brachyantha OB10G12360 I 0.778
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.778
OBART03G10450 Oryza barthii OBART03G10450 I 0.778
MDP0000254224 Malus domestica MDP0000254224 I 0.772
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.770
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.769
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.768
LBD19 Arabidopsis thaliana AT2G45410 D 0.768
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.768
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.768
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.768
Bo4g024610 Brassica oleracea Bo4g024610 I 0.768
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.768
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.768
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.768
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.768
Cla007068 Citrullus lanatus Cla007068 I 0.768
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.768
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.768
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.768
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.768
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.768
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.768
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.768
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.768
Pm017936 Prunus mume Pm017936 I 0.768
mgf006429m Mimulus guttatus mgf006429m I 0.768
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.768
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.767
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.766
TCM_005496 Theobroma cacao TCM_005496 I 0.761
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.759
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.759
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.758
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.758
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.758
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.758
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.758
Pm028642 Prunus mume Pm028642 I 0.758
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.758
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.758
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.758
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.758
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.758
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.758
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.755
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.750
Bra001087 Brassica rapa Bra001087 I 0.750
MDP0000322059 Malus domestica MDP0000322059 I 0.747
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.747
LBD20 Arabidopsis thaliana AT3G03760 I 0.747
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.747
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.747
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.747
Bo1g153580 Brassica oleracea Bo1g153580 I 0.747
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.747
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.747
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.747
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.747
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.747
Cla002965 Citrullus lanatus Cla002965 I 0.747
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.747
Bo4g195520 Brassica oleracea Bo4g195520 I 0.747
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.747
Bra036436 Brassica rapa Bra036436 I 0.747
Bra040312 Brassica rapa Bra040312 I 0.747
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.747
TCM_025849 Theobroma cacao TCM_025849 I 0.747
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.747
30072.m000955 Ricinus communis 30072.m000955 I 0.747
Bra040311 Brassica rapa Bra040311 I 0.747
Bo4g195510 Brassica oleracea Bo4g195510 I 0.742
PGSC0003DMG400012757 Solanum tuberosum PGSC0003DMG400012757 I 0.740
Bra004910 Brassica rapa Bra004910 I 0.737
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.737
Bo4g024620 Brassica oleracea Bo4g024620 I 0.737
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.737
Bra004908 Brassica rapa Bra004908 I 0.737
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.737
LBD18 Arabidopsis thaliana AT2G45420 D 0.737
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.737
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.737
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.737
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.737
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.737
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.736
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.735
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.727
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.727
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.727
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.727
Ca_20428 Cicer arietinum Ca_20428 I 0.727
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.727
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.727
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.727
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.725
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.721
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.719
GLYMA02G27230 Glycine max GLYMA02G27230 I 0.717
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.717
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.717
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.717
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.717
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.717
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I 0.711
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.707
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.707
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.707
chr1.LjT38H23.30.nd Lotus japonicus chr1.LjT38H23.30.nd I 0.707
TCM_004106 Theobroma cacao TCM_004106 I 0.707
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.707
GLYMA10G11031 Glycine max GLYMA10G11031 I 0.707
OB03G20590 Oryza brachyantha OB03G20590 I 0.707
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.707
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.707
Bo9g002160 Brassica oleracea Bo9g002160 I 0.707
Bra037323 Brassica rapa Bra037323 I 0.707
Ca_12213 Cicer arietinum Ca_12213 I 0.707
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.707