Thhalv10028937m.g (Eutrema salsugineum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Thhalv10028937m.g T247370_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.980 0.980
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.980 0.980
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.808 0.808
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.808 0.808
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.717 0.717
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.717 0.717
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.717 0.717
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.707 0.707
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10028937m LOB 19 118

Links

Other LOB family TFs
Other Eutrema salsugineum TFs

269 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD30 Arabidopsis thaliana AT4G00220 D 0.980
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.980
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.970
Bra037323 Brassica rapa Bra037323 I 0.970
Bo9g002160 Brassica oleracea Bo9g002160 I 0.970
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.960
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.960
Bra008514 Brassica rapa Bra008514 I 0.929
Bo2g097560 Brassica oleracea Bo2g097560 I 0.929
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.859
Pm017936 Prunus mume Pm017936 I 0.859
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.859
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.859
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.859
Cla007068 Citrullus lanatus Cla007068 I 0.848
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.848
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.848
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.848
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.848
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.848
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.848
30174.m008898 Ricinus communis 30174.m008898 I 0.848
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.848
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.838
OS03G0246900 Oryza sativa OS03G0246900 I 0.838
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.838
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.838
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.838
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.838
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.838
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.838
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.838
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.838
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.838
OBART03G10450 Oryza barthii OBART03G10450 I 0.838
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.838
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.833
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.828
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.828
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.828
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.828
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.828
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.818
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.818
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.818
Bra040311 Brassica rapa Bra040311 I 0.818
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.818
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.818
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.809
LBD18 Arabidopsis thaliana AT2G45420 D 0.808
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.808
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.808
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.808
OB10G12360 Oryza brachyantha OB10G12360 I 0.808
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.808
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.808
PK25573.1 Cannabis sativa PK25573.1 I 0.808
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.808
Bo4g195520 Brassica oleracea Bo4g195520 I 0.808
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.808
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.808
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.808
Bo4g024620 Brassica oleracea Bo4g024620 I 0.808
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.808
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.808
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.808
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.808
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.808
TCM_005496 Theobroma cacao TCM_005496 I 0.804
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.798
Bra004910 Brassica rapa Bra004910 I 0.798
Pm017935 Prunus mume Pm017935 I 0.798
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.788
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.788
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.778
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.778
OS10G0162600 Oryza sativa OS10G0162600 I 0.778
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.778
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.778
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.778
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.778
Bo1g153580 Brassica oleracea Bo1g153580 I 0.778
LBD20 Arabidopsis thaliana AT3G03760 I 0.778
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.778
Bra036436 Brassica rapa Bra036436 I 0.778
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.778
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.778
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.778
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.778
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.778
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.768
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.768
Cla007069 Citrullus lanatus Cla007069 I 0.768
MDP0000429067 Malus domestica MDP0000429067 I 0.768
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.768
PK23185.1 Cannabis sativa PK23185.1 I 0.768
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.768
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.768
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.768
mgf006429m Mimulus guttatus mgf006429m I 0.768
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.768
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.759
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.759
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.758
MDP0000254224 Malus domestica MDP0000254224 I 0.758
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.758
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.758
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.758
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.758
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.758
30174.m008897 Ricinus communis 30174.m008897 I 0.758
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.758
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.758
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.758
Ca_19598 Cicer arietinum Ca_19598 I 0.758
TCM_025849 Theobroma cacao TCM_025849 I 0.758
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.758
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.758
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.758
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.758
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.747
MDP0000322059 Malus domestica MDP0000322059 I 0.747
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.747
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.747
Pm028642 Prunus mume Pm028642 I 0.747
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.747
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.747
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.747
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.747
Cla006088 Citrullus lanatus Cla006088 I 0.747
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.747
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.747
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.747
OB03G20590 Oryza brachyantha OB03G20590 I 0.747
Cla002965 Citrullus lanatus Cla002965 I 0.747
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.747
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.747
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.747
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.747
PK23380.1 Cannabis sativa PK23380.1 I 0.746
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.742
Bo3g036000 Brassica oleracea Bo3g036000 I 0.742
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.739
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.737
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.737
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.737
30072.m000955 Ricinus communis 30072.m000955 I 0.737
OB08G30680 Oryza brachyantha OB08G30680 I 0.737
MDP0000145761 Malus domestica MDP0000145761 I 0.737
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.737
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.737
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.737
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.737
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.737
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.737
chr1.LjT38H23.30.nd Lotus japonicus chr1.LjT38H23.30.nd I 0.737
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.737
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.737
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.737
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.737
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.737
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.737
PK00972.1 Cannabis sativa PK00972.1 I 0.733
TCM_005497 Theobroma cacao TCM_005497 I 0.727
Si015156m.g Setaria italica Si015156m.g I 0.727
mgf020735m Mimulus guttatus mgf020735m I 0.727
Si040019m.g Setaria italica Si040019m.g I 0.727
OBART03G03830 Oryza barthii OBART03G03830 I 0.727
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.727
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.727
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.727
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.727
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.727
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.727
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.727
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.727
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.727
OB03G13890 Oryza brachyantha OB03G13890 I 0.727
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.727
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.727
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.727
29883.m002035 Ricinus communis 29883.m002035 I 0.727
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.727
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.727
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.727
Cla021625 Citrullus lanatus Cla021625 I 0.727
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.727
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.727
OS03G0149100 Oryza sativa OS03G0149100 I 0.727
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.727
Pm020629 Prunus mume Pm020629 I 0.727
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.727
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.727
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.717
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.717
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.717
LBD16 Arabidopsis thaliana AT2G42430 D 0.717
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.717
Bra004693 Brassica rapa Bra004693 I 0.717
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.717
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.717
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.717
Bo3g036030 Brassica oleracea Bo3g036030 I 0.717
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.717
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.717
Bo4g016000 Brassica oleracea Bo4g016000 I 0.717
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.717
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.717
Bo4g191530 Brassica oleracea Bo4g191530 I 0.717
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.717
Bra000257 Brassica rapa Bra000257 I 0.717
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.717
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.717
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.717
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.717
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.717
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.717
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.717
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.717
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.717
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.717
Ca_20428 Cicer arietinum Ca_20428 I 0.717
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.717
TCM_004106 Theobroma cacao TCM_004106 I 0.717
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.717
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.717
Ca_07763 Cicer arietinum Ca_07763 I 0.717
OS08G0563400 Oryza sativa OS08G0563400 I 0.717
Ca_12213 Cicer arietinum Ca_12213 I 0.717
OBART08G23860 Oryza barthii OBART08G23860 I 0.717
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.717
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.717
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.717
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.717
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.717
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.717
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.717
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.717
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.717
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.711
OGLUM03G03710 Oryza glumaepatula OGLUM03G03710 I 0.708
OLONG_020841 Oryza longistaminata OLONG_020841 I 0.708
Ca_20429 Cicer arietinum Ca_20429 I 0.708
Ca_12214 Cicer arietinum Ca_12214 I 0.707
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.707
PRUPE_ppa025889mg Prunus persica PRUPE_ppa025889mg I 0.707
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.707
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.707
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.707
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.707
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.707
LBD19 Arabidopsis thaliana AT2G45410 D 0.707
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.707
mgf020773m Mimulus guttatus mgf020773m I 0.707
GSMUA_Achr9G10530_001 Musa acuminata GSMUA_Achr9G10530_001 I 0.707
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.707
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.707
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.707
MDP0000131964 Malus domestica MDP0000131964 I 0.707
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.707
Cla006087 Citrullus lanatus Cla006087 I 0.707
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.707
Bra016877 Brassica rapa Bra016877 I 0.707
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.707
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.707
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.707
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.707
POPTR_0047s00280 Populus trichocarpa POPTR_0047s00280 I 0.705
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.702