PK00972.1 (Cannabis sativa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 PK00972.1 T247371_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.733 0.733
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.733 0.733
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.717 0.717
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK00972.1 LOB 11 71

Links

Other LOB family TFs
Other Cannabis sativa TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0010s20800 Populus trichocarpa POPTR_0010s20800 I 0.833
Gorai.011G267700 Gossypium raimondii Gorai.011G267700 I 0.833
Eucgr.G02955 Eucalyptus grandis Eucgr.G02955 I 0.833
PRUPE_ppa018815mg Prunus persica PRUPE_ppa018815mg N 0.817
gene26330-v1.0-hybrid Fragaria vesca gene26330-v1.0-hybrid N 0.817
Pm018835 Prunus mume Pm018835 N 0.817
GLYMA14G07260 Glycine max GLYMA14G07260 N 0.800
Ca_16122 Cicer arietinum Ca_16122 N 0.800
MDP0000123797 Malus domestica MDP0000123797 N 0.800
evm.TU.supercontig_1.438 Carica papaya evm.TU.supercontig_1.438 I 0.800
Cla004059 Citrullus lanatus Cla004059 N 0.800
Cucsa.165150 Cucumis sativus Cucsa.165150 N 0.800
LjSGA_054888.1 Lotus japonicus LjSGA_054888.1 I 0.750
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.750
LBD33 Arabidopsis lyrata Al_scaffold_0006_527 N 0.750
Lus10004707.g Linum usitatissimum Lus10004707.g N 0.750
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.750
LBD33 Arabidopsis thaliana AT5G06080 N 0.750
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.750
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.733
Cla021625 Citrullus lanatus Cla021625 I 0.733
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.733
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.733
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.733
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.733
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.733
Cagra.2117s0054 Capsella grandiflora Cagra.2117s0054 N 0.733
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.733
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.733
OB03G20590 Oryza brachyantha OB03G20590 I 0.733
mgf020558m Mimulus guttatus mgf020558m N 0.733
LBD30 Arabidopsis thaliana AT4G00220 D 0.733
MDP0000254224 Malus domestica MDP0000254224 I 0.733
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.733
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.733
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.733
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.733
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.733
OBART03G10450 Oryza barthii OBART03G10450 I 0.733
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.733
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.733
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.733
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.733
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.733
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.733
Carubv10002921m.g Capsella rubella Carubv10002921m.g N 0.733
OS03G0246900 Oryza sativa OS03G0246900 I 0.733
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.717
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.717
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.717
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.717
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.700
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.700
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.700
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.700
OB10G12360 Oryza brachyantha OB10G12360 I 0.700
PK25573.1 Cannabis sativa PK25573.1 I 0.700
PK23380.1 Cannabis sativa PK23380.1 I 0.700
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.700
Cla002965 Citrullus lanatus Cla002965 I 0.700
Bo4g195520 Brassica oleracea Bo4g195520 I 0.700
Bra004910 Brassica rapa Bra004910 I 0.700
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.700
Pm028642 Prunus mume Pm028642 I 0.700
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.700
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.700
Bo4g024620 Brassica oleracea Bo4g024620 I 0.700
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.700
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.700