CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PK03716.1
(
Cannabis sativa
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
PK03716.1
T247375_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.765
0.765
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.765
0.765
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK03716.1
LOB
1
34
NLRLRDPVYGCMGLISALQQQIQTLQAELNAVRT
Links
Other
LOB
family TFs
Other
Cannabis sativa
TFs
108 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aquca_005_00169
Aquilegia coerulea
Aquca_005_00169
I
0.882
mgf011471m
Mimulus guttatus
mgf011471m
I
0.882
GLYMA14G38280
Glycine max
GLYMA14G38280
I
0.882
evm.TU.supercontig_2.327
Carica papaya
evm.TU.supercontig_2.327
I
0.882
cassava15554.m1
Manihot esculenta
cassava15554.m1
I
0.853
Lus10009930.g
Linum usitatissimum
Lus10009930.g
I
0.853
LjSGA_040320.1
Lotus japonicus
LjSGA_040320.1
I
0.853
Pm019028
Prunus mume
Pm019028
I
0.853
MDP0000278334
Malus domestica
MDP0000278334
I
0.853
Gorai.009G295000
Gossypium raimondii
Gorai.009G295000
I
0.853
cassava20848.m1
Manihot esculenta
cassava20848.m1
I
0.853
Cucsa.144080
Cucumis sativus
Cucsa.144080
I
0.853
MTR_5g075020
Medicago truncatula
MTR_5g075020
I
0.853
evm.TU.supercontig_19.92
Carica papaya
evm.TU.supercontig_19.92
I
0.853
TCM_045438
Theobroma cacao
TCM_045438
I
0.853
Pm000277
Prunus mume
Pm000277
I
0.853
29957.m001411
Ricinus communis
29957.m001411
I
0.853
LBD15
Vitis vinifera
VIT_13s0067g02380
I
0.853
Cla007391
Citrullus lanatus
Cla007391
I
0.853
PRUPE_ppa011757mg
Prunus persica
PRUPE_ppa011757mg
I
0.853
AMTR_s00007p00227160
Amborella trichopoda
AMTR_s00007p00227160
I
0.853
LBD15
Arabidopsis thaliana
AT2G40470
I
0.824
Thhalv10017905m.g
Eutrema salsugineum
Thhalv10017905m.g
I
0.824
Ca_04126
Cicer arietinum
Ca_04126
I
0.824
Bo4g012620
Brassica oleracea
Bo4g012620
I
0.824
gene21311-v1.0-hybrid
Fragaria vesca
gene21311-v1.0-hybrid
I
0.824
Cagra.1642s0010
Capsella grandiflora
Cagra.1642s0010
I
0.824
Carubv10024002m.g
Capsella rubella
Carubv10024002m.g
I
0.824
gw1.9.232.1
Physcomitrella patens
gw1.9.232.1
I
0.824
SapurV1A.0222s0070
Salix purpurea
SapurV1A.0222s0070
I
0.824
POPTR_0013s08040
Populus trichocarpa
POPTR_0013s08040
I
0.824
Bra004572
Brassica rapa
Bra004572
I
0.824
Bra016992
Brassica rapa
Bra016992
I
0.824
GSMUA_Achr11G08330_001
Musa acuminata
GSMUA_Achr11G08330_001
I
0.824
Gorai.013G005900
Gossypium raimondii
Gorai.013G005900
I
0.824
Bostr.23794s0013
Boechera stricta
Bostr.23794s0013
I
0.824
POPTR_0013s15220
Populus trichocarpa
POPTR_0013s15220
I
0.824
LBD15
Arabidopsis lyrata
fgenesh2_kg.4__2164__AT2G40470.1
I
0.824
cassava31953.m1
Manihot esculenta
cassava31953.m1
I
0.794
OPUNC01G34540
Oryza punctata
OPUNC01G34540
I
0.794
MTR_3g094690
Medicago truncatula
MTR_3g094690
I
0.794
Bra021627
Brassica rapa
Bra021627
I
0.794
mgf020556m
Mimulus guttatus
mgf020556m
I
0.794
Bra000188
Brassica rapa
Bra000188
I
0.794
Bo4g190210
Brassica oleracea
Bo4g190210
I
0.794
Bo3g034980
Brassica oleracea
Bo3g034980
I
0.794
Bo4g172950
Brassica oleracea
Bo4g172950
I
0.794
LBD13
Arabidopsis lyrata
fgenesh2_kg.4__1005__AT2G30340.1
I
0.794
orange1.1g027307m.g
Citrus sinensis
orange1.1g027307m.g
I
0.794
GLYMA02G40080
Glycine max
GLYMA02G40080
I
0.794
chr1.CM0125.30.nd
Lotus japonicus
chr1.CM0125.30.nd
I
0.794
Ciclev10032684m.g
Citrus clementina
Ciclev10032684m.g
I
0.794
Gorai.003G151800
Gossypium raimondii
Gorai.003G151800
I
0.794
gene28137-v1.0-hybrid
Fragaria vesca
gene28137-v1.0-hybrid
I
0.794
LBD13
Vitis vinifera
VIT_06s0004g07790
I
0.765
TRIUR3_34193
Triticum urartu
TRIUR3_34193
I
0.765
Bostr.24513s0205
Boechera stricta
Bostr.24513s0205
I
0.765
chr2.CM1032.110.nc
Lotus japonicus
chr2.CM1032.110.nc
I
0.765
Pavir.Ea03276
Panicum virgatum
Pavir.Ea03276
I
0.765
Thhalv10017073m.g
Eutrema salsugineum
Thhalv10017073m.g
I
0.765
Cla006731
Citrullus lanatus
Cla006731
I
0.765
PGSC0003DMG400030461
Solanum tuberosum
PGSC0003DMG400030461
I
0.765
OBART01G35680
Oryza barthii
OBART01G35680
I
0.765
MLOC_16076
Hordeum vulgare
MLOC_16076
I
0.765
LPERR01G30700
Leersia perrieri
LPERR01G30700
I
0.765
OBART05G04570
Oryza barthii
OBART05G04570
I
0.765
Solyc06g050430.2
Solanum lycopersicum
Solyc06g050430.2
I
0.765
OMERI01G32750
Oryza meridionalis
OMERI01G32750
I
0.765
OLONG_000658
Oryza longistaminata
OLONG_000658
I
0.765
OGLUM05G04450
Oryza glumaepatula
OGLUM05G04450
I
0.765
GSMUA_Achr7G22200_001
Musa acuminata
GSMUA_Achr7G22200_001
I
0.765
GRMZM2G092517
Zea mays
GRMZM2G092517
I
0.765
BGIOSGA018747
Oryza indica
BGIOSGA018747
I
0.765
BGIOSGA004719
Oryza indica
BGIOSGA004719
I
0.765
LBD13
Arabidopsis thaliana
AT2G30340
D
0.765
Bo4g059520
Brassica oleracea
Bo4g059520
I
0.765
Bra018320
Brassica rapa
Bra018320
I
0.765
F775_25790
Aegilops tauschii
F775_25790
I
0.765
BRADI2G53690
Brachypodium distachyon
BRADI2G53690
I
0.765
OMERI05G04500
Oryza meridionalis
OMERI05G04500
I
0.765
OGLUM01G39690
Oryza glumaepatula
OGLUM01G39690
I
0.765
ONIVA01G40640
Oryza nivara
ONIVA01G40640
I
0.765
PGSC0003DMG400029080
Solanum tuberosum
PGSC0003DMG400029080
I
0.765
Si004575m.g
Setaria italica
Si004575m.g
I
0.765
Sb03g038410
Sorghum bicolor
Sb03g038410
I
0.765
OS05G0165450
Oryza sativa
OS05G0165450
I
0.765
OS01G0825000
Oryza sativa
OS01G0825000
I
0.765
ORUFI05G04770
Oryza rufipogon
ORUFI05G04770
I
0.765
ORGLA05G0042200
Oryza glaberrima
ORGLA05G0042200
I
0.765
ORUFI01G39050
Oryza rufipogon
ORUFI01G39050
I
0.765
ORGLA01G0294900
Oryza glaberrima
ORGLA01G0294900
I
0.765
ONIVA05G04920
Oryza nivara
ONIVA05G04920
I
0.765
Bo4g190140
Brassica oleracea
Bo4g190140
I
0.737
Pavir.J00291
Panicum virgatum
Pavir.J00291
I
0.735
Si012018m.g
Setaria italica
Si012018m.g
I
0.735
Traes_1BS_8F922CA93
Triticum aestivum
Traes_1BS_8F922CA93
I
0.735
Pavir.Eb03580
Panicum virgatum
Pavir.Eb03580
I
0.735
Traes_1DS_BB8508CC6
Triticum aestivum
Traes_1DS_BB8508CC6
I
0.735
Traes_1AS_43FB6A3CF
Triticum aestivum
Traes_1AS_43FB6A3CF
I
0.735
GSMUA_Achr5G07460_001
Musa acuminata
GSMUA_Achr5G07460_001
I
0.735
MLOC_56075
Hordeum vulgare
MLOC_56075
I
0.735
MTR_5g083960
Medicago truncatula
MTR_5g083960
I
0.735
Sb09g004940
Sorghum bicolor
Sb09g004940
I
0.735
PGSC0003DMG400020562
Solanum tuberosum
PGSC0003DMG400020562
I
0.735
Pavir.Ca01098
Panicum virgatum
Pavir.Ca01098
I
0.735
F775_52636
Aegilops tauschii
F775_52636
I
0.735
LPERR05G04040
Leersia perrieri
LPERR05G04040
I
0.706
GSMUA_AchrUn_randomG14060_001
Musa acuminata
GSMUA_AchrUn_randomG14060_001
I
0.706