PK05388.1 (Cannabis sativa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 PK05388.1 T247379_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.857 0.857
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.857 0.857
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK05388.1 LOB 1 42

Links

Other LOB family TFs
Other Cannabis sativa TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra016992 Brassica rapa Bra016992 I 0.905
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.905
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.881
Bra004572 Brassica rapa Bra004572 I 0.881
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.881
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.857
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.857
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.857
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.857
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.857
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.857
29957.m001411 Ricinus communis 29957.m001411 I 0.857
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.857
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.833
Si004575m.g Setaria italica Si004575m.g I 0.833
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.833
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.833
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.833
OS05G0165450 Oryza sativa OS05G0165450 I 0.833
F775_52636 Aegilops tauschii F775_52636 I 0.833
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.833
OBART05G04570 Oryza barthii OBART05G04570 I 0.833
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.833
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.833
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.833
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.833
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.833
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.833
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.810
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.810
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.810
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.810
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.786
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.738
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.738
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.738
PDK_20s1810211g001 Phoenix dactylifera PDK_20s1810211g001 I 0.738
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.738
Si011647m.g Setaria italica Si011647m.g I 0.738
MDP0000265429 Malus domestica MDP0000265429 I 0.714
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.714
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.714
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.714
GLYMA11G29450 Glycine max GLYMA11G29450 I 0.714
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.714
Si024229m.g Setaria italica Si024229m.g I 0.714
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.714
TCM_000560 Theobroma cacao TCM_000560 I 0.714
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.714
PK17019.1 Cannabis sativa PK17019.1 I 0.706