PK21510.1 (Cannabis sativa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 PK21510.1 T247390_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.939 0.939
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK21510.1 LOB 28 126

Links

Other LOB family TFs
Other Cannabis sativa TFs

213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.949
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.949
TCM_012190 Theobroma cacao TCM_012190 I 0.949
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.949
MDP0000254288 Malus domestica MDP0000254288 I 0.949
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.949
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.949
LOB Vitis vinifera VIT_17s0000g09010 I 0.949
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.949
30147.m013890 Ricinus communis 30147.m013890 I 0.949
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.949
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.949
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.949
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.949
Cla019510 Citrullus lanatus Cla019510 I 0.949
MDP0000130659 Malus domestica MDP0000130659 I 0.949
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.949
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.939
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.939
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.939
Bra038606 Brassica rapa Bra038606 I 0.939
Bo3g104760 Brassica oleracea Bo3g104760 I 0.939
Ca_08824 Cicer arietinum Ca_08824 I 0.939
Pm024312 Prunus mume Pm024312 I 0.939
LOB Arabidopsis thaliana AT5G63090 D 0.939
LOB Arabidopsis lyrata scaffold_802995.1 I 0.939
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.939
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.939
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.939
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.939
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.939
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.929
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.929
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.929
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.929
Bo9g017470 Brassica oleracea Bo9g017470 I 0.929
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.929
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.929
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.919
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.919
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.919
Ca_07463 Cicer arietinum Ca_07463 I 0.919
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.909
Bra035860 Brassica rapa Bra035860 I 0.909
mgf024603m Mimulus guttatus mgf024603m I 0.899
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.899
F775_25656 Aegilops tauschii F775_25656 I 0.889
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.889
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.889
Si002632m.g Setaria italica Si002632m.g I 0.889
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.889
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.889
mgf016361m Mimulus guttatus mgf016361m I 0.889
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.889
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.889
OB01G14220 Oryza brachyantha OB01G14220 I 0.889
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.879
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.879
Pm015649 Prunus mume Pm015649 I 0.879
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.879
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.879
TCM_016952 Theobroma cacao TCM_016952 I 0.879
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.879
OS01G0169400 Oryza sativa OS01G0169400 I 0.879
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.879
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.879
OBART01G04470 Oryza barthii OBART01G04470 I 0.879
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.879
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.879
PK26472.1 Cannabis sativa PK26472.1 I 0.879
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.869
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.869
Ca_24372 Cicer arietinum Ca_24372 I 0.869
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.869
MDP0000848210 Malus domestica MDP0000848210 I 0.869
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.869
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.869
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.869
29917.m001993 Ricinus communis 29917.m001993 I 0.869
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.859
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.859
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.859
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.859
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.859
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.859
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.859
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.848
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.848
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.848
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.848
Cla017388 Citrullus lanatus Cla017388 I 0.848
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.848
Cla010600 Citrullus lanatus Cla010600 I 0.848
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.848
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.838
Cla003499 Citrullus lanatus Cla003499 I 0.838
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.838
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.838
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.838
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.838
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.828
mgf003146m Mimulus guttatus mgf003146m I 0.818
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.818
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.818
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.808
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.808
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.808
PK18922.1 Cannabis sativa PK18922.1 I 0.807
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.800
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.798
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.788
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.788
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.788
LBD25 Arabidopsis thaliana AT3G27650 I 0.778
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.778
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.778
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.778
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.778
Bo7g085860 Brassica oleracea Bo7g085860 I 0.778
Bra025294 Brassica rapa Bra025294 I 0.778
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.778
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.778
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.778
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.768
Ca_20200 Cicer arietinum Ca_20200 I 0.768
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.768
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.768
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.768
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.758
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.758
Bo9g008330 Brassica oleracea Bo9g008330 I 0.758
Bra039072 Brassica rapa Bra039072 I 0.758
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.756
MDP0000273432 Malus domestica MDP0000273432 I 0.747
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.747
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.747
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.747
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.747
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.747
Cla005851 Citrullus lanatus Cla005851 I 0.747
AS2 Vitis vinifera VIT_00s0340g00090 I 0.747
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.747
mgf014755m Mimulus guttatus mgf014755m I 0.747
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.737
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.737
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.737
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.737
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.737
LBD6 Arabidopsis thaliana AT1G65620 D 0.737
MDP0000643326 Malus domestica MDP0000643326 I 0.737
TCM_024217 Theobroma cacao TCM_024217 I 0.737
29929.m004500 Ricinus communis 29929.m004500 I 0.737
Bra039733 Brassica rapa Bra039733 I 0.737
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.737
Bo2g167820 Brassica oleracea Bo2g167820 I 0.737
Bo2g144870 Brassica oleracea Bo2g144870 I 0.737
Bo2g051420 Brassica oleracea Bo2g051420 I 0.737
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.737
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.737
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.737
Bra033019 Brassica rapa Bra033019 I 0.737
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.737
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.727
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.727
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.727
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.727
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.727
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.717
TCM_000560 Theobroma cacao TCM_000560 I 0.717
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.717
GRMZM2G362627 Zea mays GRMZM2G362627 I 0.717
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.717
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.717
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.717
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.717
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.717
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.717
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.709
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.707
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.707
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.707
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.707
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.707
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.707
F775_21760 Aegilops tauschii F775_21760 I 0.707
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.707
Si037583m.g Setaria italica Si037583m.g I 0.707
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.707
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.707
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.707
Si036905m.g Setaria italica Si036905m.g I 0.707
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.707
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.707
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.707
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.707
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.707
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.707
OB05G24560 Oryza brachyantha OB05G24560 I 0.707
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.707
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.707
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.707
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.707
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.707
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.707
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.707
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.707
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.707
e_gw1.192.35.1 Physcomitrella patens e_gw1.192.35.1 I 0.707
Pm026450 Prunus mume Pm026450 I 0.707
OS05G0417000 Oryza sativa OS05G0417000 I 0.707
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.707