PK23380.1 (Cannabis sativa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 PK23380.1 T247393_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.791 0.791
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.791 0.791
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.791 0.791
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.761 0.761
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.761 0.761
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.746 0.746
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.746 0.746
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK23380.1 LOB 8 75

Links

Other LOB family TFs
Other Cannabis sativa TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LBD16 Arabidopsis thaliana AT2G42430 D 0.791
LBD30 Arabidopsis thaliana AT4G00220 D 0.746
Si019578m.g Setaria italica Si019578m.g I 0.776
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.791
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.910
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.716
Cucsa.388160 Cucumis sativus Cucsa.388160 I 0.881
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.761
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.761
mgf020773m Mimulus guttatus mgf020773m I 0.955
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.806
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.776
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.910
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.851
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.746
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.776
Pm028642 Prunus mume Pm028642 I 0.776
Pm020628 Prunus mume Pm020628 I 0.925
Cla021625 Citrullus lanatus Cla021625 I 0.746
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.776
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.761
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.791
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.746
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.881
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.881
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.746
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.851
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.761
Traes_6AS_4EEA3E388 Triticum aestivum Traes_6AS_4EEA3E388 I 0.791
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.761
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.761
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.791
Bostr.25993s0537 Boechera stricta Bostr.25993s0537 I 0.806
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.776
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.925
MDP0000254224 Malus domestica MDP0000254224 I 0.791
MDP0000429067 Malus domestica MDP0000429067 I 0.731
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.836
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.746
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.716
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.791
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.746
PK00972.1 Cannabis sativa PK00972.1 I 0.700
chr1.LjT38H23.30.nd Lotus japonicus chr1.LjT38H23.30.nd I 0.791
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.701
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I 0.761
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.791
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.806
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.791
Gorai.011G267700 Gossypium raimondii Gorai.011G267700 I 0.716
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.791
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.776
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.791
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.925
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.791
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.716
evm.TU.supercontig_1.438 Carica papaya evm.TU.supercontig_1.438 I 0.761
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.791
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.731
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.776
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.791
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.716
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.776
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.776
Si015156m.g Setaria italica Si015156m.g I 0.866
LBD20 Arabidopsis thaliana AT3G03760 I 0.776
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.940
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.716
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.910
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.761
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I 0.761
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.836
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.776
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.746
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.866
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.836
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.761
LPERR03G03460 Leersia perrieri LPERR03G03460 I 0.701
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.925
GLYMA02G27230 Glycine max GLYMA02G27230 I 0.746
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.791
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.761
Bo8g092560 Brassica oleracea Bo8g092560 I 0.851
Bra001087 Brassica rapa Bra001087 I 0.776
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.746
Bra016877 Brassica rapa Bra016877 I 0.791
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.881
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.731
BRADI3G55680 Brachypodium distachyon BRADI3G55680 I 0.716
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.731
F775_22967 Aegilops tauschii F775_22967 I 0.851
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.776
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.761
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.851
POPTR_0010s20800 Populus trichocarpa POPTR_0010s20800 I 0.731
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.791
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.761
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.791
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.761
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.791
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.761
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.776
OS02G0820500 Oryza sativa OS02G0820500 I 0.791
OS03G0246900 Oryza sativa OS03G0246900 I 0.761
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.791
PGSC0003DMG400020069 Solanum tuberosum PGSC0003DMG400020069 I 0.746
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.761
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.791
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.881
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.746
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.776
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.761
OB03G20590 Oryza brachyantha OB03G20590 I 0.761
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.791
OB08G30680 Oryza brachyantha OB08G30680 I 0.881
OB10G12360 Oryza brachyantha OB10G12360 I 0.761
OBART03G10450 Oryza barthii OBART03G10450 I 0.761
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.791
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.761
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.731
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.776
Bo4g052270 Brassica oleracea Bo4g052270 N 0.731
Bra007385 Brassica rapa Bra007385 N 0.806
Bra018260 Brassica rapa Bra018260 N 0.731
MDP0000123797 Malus domestica MDP0000123797 N 0.701
LBD14 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4001244 N 0.701
gene26330-v1.0-hybrid Fragaria vesca gene26330-v1.0-hybrid N 0.716
Carubv10025067m.g Capsella rubella Carubv10025067m.g N 0.731
F775_21330 Aegilops tauschii F775_21330 N 0.761
Bra016876 Brassica rapa Bra016876 N 0.821