chr1.CM0125.30.nd (Lotus japonicus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 chr1.CM0125.30.nd T247405_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG

CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.828 0.828
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG

CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.828 0.828
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0125.30.nd LOB 18 116

Links

Other LOB family TFs
Other Lotus japonicus TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.980
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.980
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.970
Ca_04126 Cicer arietinum Ca_04126 I 0.970
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.970
TCM_045438 Theobroma cacao TCM_045438 I 0.960
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.960
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.960
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.960
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.960
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.949
MDP0000278334 Malus domestica MDP0000278334 I 0.949
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.949
PK17217.1 Cannabis sativa PK17217.1 I 0.949
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.949
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.949
29729.m002335 Ricinus communis 29729.m002335 I 0.939
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.939
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.939
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.939
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.939
PK21617.1 Cannabis sativa PK21617.1 I 0.935
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.929
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.929
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.929
LBD15 Arabidopsis thaliana AT2G40470 I 0.929
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.929
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.929
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.929
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.929
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.929
MDP0000167580 Malus domestica MDP0000167580 I 0.920
Bra004572 Brassica rapa Bra004572 I 0.919
Bo3g034980 Brassica oleracea Bo3g034980 I 0.919
Bo4g012620 Brassica oleracea Bo4g012620 I 0.919
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.919
Bo4g190210 Brassica oleracea Bo4g190210 I 0.919
Bra000188 Brassica rapa Bra000188 I 0.919
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.909
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.909
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.909
Pm019028 Prunus mume Pm019028 I 0.909
Cla007391 Citrullus lanatus Cla007391 I 0.909
Ca_12420 Cicer arietinum Ca_12420 I 0.899
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.899
Bra016992 Brassica rapa Bra016992 I 0.899
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.899
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.899
OB05G14280 Oryza brachyantha OB05G14280 I 0.897
TCM_042262 Theobroma cacao TCM_042262 I 0.889
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.889
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.889
PK05388.1 Cannabis sativa PK05388.1 I 0.881
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.879
mgf011471m Mimulus guttatus mgf011471m I 0.879
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.879
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.879
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.879
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.879
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.879
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.877
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.874
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.869
29957.m001411 Ricinus communis 29957.m001411 I 0.869
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.869
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.869
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.869
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.869
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.869
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.863
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.859
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.859
Ca_15642 Cicer arietinum Ca_15642 I 0.859
mgf020556m Mimulus guttatus mgf020556m I 0.859
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.859
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.859
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.859
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.859
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.859
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.859
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.851
Pm000277 Prunus mume Pm000277 I 0.848
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.848
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.848
OS05G0165450 Oryza sativa OS05G0165450 I 0.848
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.848
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.848
Si012018m.g Setaria italica Si012018m.g I 0.848
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.848
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.848
OBART05G04570 Oryza barthii OBART05G04570 I 0.848
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.848
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.848
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.848
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.848
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.848
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.838
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.838
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.838
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.828
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.828
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.828
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.828
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.828
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.828
OB01G44400 Oryza brachyantha OB01G44400 I 0.828
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.828
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.828
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.828
OBART01G35680 Oryza barthii OBART01G35680 I 0.828
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.828
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.828
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.828
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.828
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.828
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.828
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.828
Bo4g172950 Brassica oleracea Bo4g172950 I 0.828
Bo4g059520 Brassica oleracea Bo4g059520 I 0.828
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.828
LBD13 Arabidopsis thaliana AT2G30340 D 0.828
Bra018320 Brassica rapa Bra018320 I 0.828
Bra021627 Brassica rapa Bra021627 I 0.828
F775_52636 Aegilops tauschii F775_52636 I 0.828
F775_25790 Aegilops tauschii F775_25790 I 0.828
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.828
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.828
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.828
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.828
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.828
Si004575m.g Setaria italica Si004575m.g I 0.828
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.828
OS01G0825000 Oryza sativa OS01G0825000 I 0.828
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.828
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.818
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.818
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.818
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.818
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.808
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.808
PK03716.1 Cannabis sativa PK03716.1 I 0.794
Bo4g190140 Brassica oleracea Bo4g190140 I 0.789
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.788
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.788
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.758
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.746
PK17019.1 Cannabis sativa PK17019.1 I 0.735
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.729
Cla006731 Citrullus lanatus Cla006731 I 0.727
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.727
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.727
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.727
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.727
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.723
PK29334.1 Cannabis sativa PK29334.1 I 0.719
30169.m006340 Ricinus communis 30169.m006340 I 0.717
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.717
TCM_032557 Theobroma cacao TCM_032557 I 0.717
Si026864m.g Setaria italica Si026864m.g I 0.717
F775_33210 Aegilops tauschii F775_33210 I 0.712
Bo3g024350 Brassica oleracea Bo3g024350 I 0.707
mgf026046m Mimulus guttatus mgf026046m I 0.707
Pm011040 Prunus mume Pm011040 I 0.707
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.707
Ca_12450 Cicer arietinum Ca_12450 I 0.707
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.707
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.707
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.707
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.707
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.707
Bra022780 Brassica rapa Bra022780 I 0.707
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.707
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.707
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
MDP0000268890 Malus domestica MDP0000268890 I 0.707
MDP0000284409 Malus domestica MDP0000284409 I 0.707
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707