chr1.CM1255.40.nc (Lotus japonicus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 chr1.CM1255.40.nc T247407_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.818 0.818
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.818 0.818
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.778 0.778
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.778 0.778
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.717 0.717
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.717 0.717
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.717 0.717
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.717 0.717
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM1255.40.nc LOB 31 130

Links

Other LOB family TFs
Other Lotus japonicus TFs

257 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.859
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.848
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.848
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.848
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.848
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.848
Cla007068 Citrullus lanatus Cla007068 I 0.848
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.848
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.848
OS03G0246900 Oryza sativa OS03G0246900 I 0.838
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.838
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.838
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.838
OBART03G10450 Oryza barthii OBART03G10450 I 0.838
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.838
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.838
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.838
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.838
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.838
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.838
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.838
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.838
Pm017936 Prunus mume Pm017936 I 0.838
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.838
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.838
30174.m008898 Ricinus communis 30174.m008898 I 0.838
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.838
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.838
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.833
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.828
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.828
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.828
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.828
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.828
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.828
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.828
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.828
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.828
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.819
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.818
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.818
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.818
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.818
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.818
LBD18 Arabidopsis thaliana AT2G45420 D 0.818
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.818
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.818
Bo4g024620 Brassica oleracea Bo4g024620 I 0.818
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.818
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.818
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.816
TCM_005496 Theobroma cacao TCM_005496 I 0.815
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.808
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.808
mgf020735m Mimulus guttatus mgf020735m I 0.808
Bra040311 Brassica rapa Bra040311 I 0.808
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.808
OB10G12360 Oryza brachyantha OB10G12360 I 0.808
Bra004910 Brassica rapa Bra004910 I 0.808
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.808
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.808
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.808
Bo4g195520 Brassica oleracea Bo4g195520 I 0.798
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.788
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.788
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.788
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.788
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.788
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.788
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.788
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.788
Ca_20428 Cicer arietinum Ca_20428 I 0.788
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.788
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.788
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.788
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.788
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.788
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.788
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.788
OS10G0162600 Oryza sativa OS10G0162600 I 0.788
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.778
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.778
LBD30 Arabidopsis thaliana AT4G00220 D 0.778
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.778
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.778
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.778
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.778
MDP0000254224 Malus domestica MDP0000254224 I 0.778
PK25573.1 Cannabis sativa PK25573.1 I 0.768
Bo9g002160 Brassica oleracea Bo9g002160 I 0.768
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.768
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.768
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.768
Pm017935 Prunus mume Pm017935 I 0.768
Ca_19598 Cicer arietinum Ca_19598 I 0.768
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.768
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.768
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.768
Bra037323 Brassica rapa Bra037323 I 0.768
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.768
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.768
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.768
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.761
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.759
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.759
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.758
Cla021625 Citrullus lanatus Cla021625 I 0.758
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.758
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.758
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.758
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.758
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.758
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.758
MDP0000429067 Malus domestica MDP0000429067 I 0.758
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.758
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.758
Cla007069 Citrullus lanatus Cla007069 I 0.758
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.758
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.758
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.747
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.747
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.747
Bo1g153580 Brassica oleracea Bo1g153580 I 0.747
LBD20 Arabidopsis thaliana AT3G03760 I 0.747
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.747
30072.m000955 Ricinus communis 30072.m000955 I 0.747
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.747
30174.m008897 Ricinus communis 30174.m008897 I 0.747
Bo2g097560 Brassica oleracea Bo2g097560 I 0.747
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.747
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.747
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.747
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.747
mgf006429m Mimulus guttatus mgf006429m I 0.747
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.747
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.747
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.747
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.747
Pm028642 Prunus mume Pm028642 I 0.747
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.747
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.747
TCM_005497 Theobroma cacao TCM_005497 I 0.747
Bo9g002150 Brassica oleracea Bo9g002150 I 0.747
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.747
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.747
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.747
Bra008514 Brassica rapa Bra008514 I 0.747
Bra036436 Brassica rapa Bra036436 I 0.747
OB03G20590 Oryza brachyantha OB03G20590 I 0.747
Bra037322 Brassica rapa Bra037322 I 0.747
TRIUR3_25587 Triticum urartu TRIUR3_25587 I 0.747
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.742
TCM_025849 Theobroma cacao TCM_025849 I 0.737
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.737
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.737
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.737
Cla002965 Citrullus lanatus Cla002965 I 0.737
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.737
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.737
MDP0000322059 Malus domestica MDP0000322059 I 0.737
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.737
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.737
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.737
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.727
Bo4g191530 Brassica oleracea Bo4g191530 I 0.727
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.727
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.727
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.727
GLYMA02G27230 Glycine max GLYMA02G27230 I 0.727
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.727
LBD31 Arabidopsis thaliana AT4G00210 I 0.727
Bo4g016000 Brassica oleracea Bo4g016000 I 0.727
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.727
Bo4g024610 Brassica oleracea Bo4g024610 I 0.727
PK23185.1 Cannabis sativa PK23185.1 I 0.727
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.727
Bra004693 Brassica rapa Bra004693 I 0.727
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.727
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.727
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.727
TCM_004106 Theobroma cacao TCM_004106 I 0.727
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.727
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.725
Aquca_009_00958 Aquilegia coerulea Aquca_009_00958 I 0.724
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.723
Ca_20429 Cicer arietinum Ca_20429 I 0.719
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.717
LBD19 Arabidopsis thaliana AT2G45410 D 0.717
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.717
LBD16 Arabidopsis thaliana AT2G42430 D 0.717
GLYMA10G11031 Glycine max GLYMA10G11031 I 0.717
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.717
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.717
F775_04528 Aegilops tauschii F775_04528 I 0.717
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.717
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.717
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.717
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.717
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.717
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.717
MDP0000131964 Malus domestica MDP0000131964 I 0.717
OBART03G03830 Oryza barthii OBART03G03830 I 0.717
Bra040312 Brassica rapa Bra040312 I 0.717
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.717
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.717
OB03G13890 Oryza brachyantha OB03G13890 I 0.717
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.717
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.717
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.717
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.717
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.717
OS03G0149100 Oryza sativa OS03G0149100 I 0.717
Bra004908 Brassica rapa Bra004908 I 0.717
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.717
Si040019m.g Setaria italica Si040019m.g I 0.717
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.717
Ca_19716 Cicer arietinum Ca_19716 I 0.717
Cla006088 Citrullus lanatus Cla006088 I 0.717
Ca_12213 Cicer arietinum Ca_12213 I 0.717
Pm020629 Prunus mume Pm020629 I 0.717
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.717
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.717
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.717
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.717
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.717
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.717
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.717
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.717
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.717
Bra016877 Brassica rapa Bra016877 I 0.717
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.717
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.717
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.717
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.717
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.717
PGSC0003DMG400012757 Solanum tuberosum PGSC0003DMG400012757 I 0.712
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.711
Bo3g036000 Brassica oleracea Bo3g036000 I 0.710
Bo4g195510 Brassica oleracea Bo4g195510 I 0.708
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.707
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.707
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.707
chr1.LjT38H23.30.nd Lotus japonicus chr1.LjT38H23.30.nd I 0.707
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.707
29883.m002035 Ricinus communis 29883.m002035 I 0.707
chr2.LjT13P17.280.nd Lotus japonicus chr2.LjT13P17.280.nd I 0.707
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.707
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.707
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.707
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.707
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.707
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.707
Lus10000707.g Linum usitatissimum Lus10000707.g I 0.707
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.707
MDP0000145761 Malus domestica MDP0000145761 I 0.707
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.707
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.707