chr1.LjT38H23.30.nd (Lotus japonicus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 chr1.LjT38H23.30.nd T247410_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.737 0.737
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.737 0.737
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.737 0.737
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.737 0.737
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.737 0.737
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.737 0.737
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.LjT38H23.30.nd LOB 56 155

Links

Other LOB family TFs
Other Lotus japonicus TFs

259 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30072.m000955 Ricinus communis 30072.m000955 I 0.929
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.919
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.909
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.899
MDP0000322059 Malus domestica MDP0000322059 I 0.899
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.899
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.899
TCM_025849 Theobroma cacao TCM_025849 I 0.889
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.889
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.889
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.889
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.879
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.879
Bra036436 Brassica rapa Bra036436 I 0.879
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.879
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.879
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.879
Pm028642 Prunus mume Pm028642 I 0.879
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.879
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.879
LBD20 Arabidopsis thaliana AT3G03760 I 0.879
Bo1g153580 Brassica oleracea Bo1g153580 I 0.879
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.879
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.876
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.859
mgf006429m Mimulus guttatus mgf006429m I 0.859
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.848
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.828
Cla002965 Citrullus lanatus Cla002965 I 0.828
Ca_19716 Cicer arietinum Ca_19716 I 0.828
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.828
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.828
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.828
GLYMA10G11031 Glycine max GLYMA10G11031 I 0.828
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.818
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.818
GLYMA02G27230 Glycine max GLYMA02G27230 I 0.818
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.798
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.793
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.793
PK23380.1 Cannabis sativa PK23380.1 I 0.791
MTR_6g027710 Medicago truncatula MTR_6g027710 I 0.788
GSMUA_Achr9G10530_001 Musa acuminata GSMUA_Achr9G10530_001 I 0.788
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.784
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.778
Pm017936 Prunus mume Pm017936 I 0.778
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.778
chr2.LjT13P17.280.nd Lotus japonicus chr2.LjT13P17.280.nd I 0.778
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.778
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.778
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.768
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.768
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.768
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.768
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.768
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.768
30174.m008898 Ricinus communis 30174.m008898 I 0.768
Cla007068 Citrullus lanatus Cla007068 I 0.768
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.768
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.768
TCM_005496 Theobroma cacao TCM_005496 I 0.761
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.758
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.758
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.758
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.758
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.758
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.758
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.758
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.756
Bo3g036000 Brassica oleracea Bo3g036000 I 0.753
MDP0000159122 Malus domestica MDP0000159122 I 0.753
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.747
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.747
Pm020629 Prunus mume Pm020629 I 0.747
Bra037323 Brassica rapa Bra037323 I 0.747
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.747
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.747
Bra040311 Brassica rapa Bra040311 I 0.747
Bo9g002160 Brassica oleracea Bo9g002160 I 0.747
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.747
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.747
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.747
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.747
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.747
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.747
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.747
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.747
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.747
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.747
Cla006088 Citrullus lanatus Cla006088 I 0.747
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.747
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.747
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.745
Ca_12213 Cicer arietinum Ca_12213 I 0.737
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.737
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.737
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.737
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.737
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.737
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.737
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.737
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.737
29883.m002035 Ricinus communis 29883.m002035 I 0.737
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.737
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.737
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.737
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.737
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.737
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.737
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.737
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.737
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.737
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.737
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.737
OS03G0246900 Oryza sativa OS03G0246900 I 0.737
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.737
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.737
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.737
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.737
Bra008514 Brassica rapa Bra008514 I 0.737
Bra004910 Brassica rapa Bra004910 I 0.737
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.737
Bo2g097560 Brassica oleracea Bo2g097560 I 0.737
LBD30 Arabidopsis thaliana AT4G00220 D 0.737
LBD18 Arabidopsis thaliana AT2G45420 D 0.737
LBD16 Arabidopsis thaliana AT2G42430 D 0.737
Bo4g016000 Brassica oleracea Bo4g016000 I 0.737
Bo4g024620 Brassica oleracea Bo4g024620 I 0.737
Bra004693 Brassica rapa Bra004693 I 0.737
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.737
Bo4g195520 Brassica oleracea Bo4g195520 I 0.737
Bo4g191530 Brassica oleracea Bo4g191530 I 0.737
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.737
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.737
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.737
OBART03G10450 Oryza barthii OBART03G10450 I 0.737
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.737
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.737
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.737
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.737
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.737
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.737
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.737
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.737
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.737
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.737
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.735
POPTR_0047s00280 Populus trichocarpa POPTR_0047s00280 I 0.731
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.727
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.727
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.727
Bo9g002150 Brassica oleracea Bo9g002150 I 0.727
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.727
OS02G0820500 Oryza sativa OS02G0820500 I 0.727
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.727
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.727
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.727
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.727
OB10G12360 Oryza brachyantha OB10G12360 I 0.727
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.727
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.727
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.727
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.727
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.727
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.727
TCM_004106 Theobroma cacao TCM_004106 I 0.727
OB02G44330 Oryza brachyantha OB02G44330 I 0.727
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.727
Bra037322 Brassica rapa Bra037322 I 0.727
Bra016877 Brassica rapa Bra016877 I 0.727
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.727
MDP0000131964 Malus domestica MDP0000131964 I 0.727
MDP0000145761 Malus domestica MDP0000145761 I 0.727
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.727
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.727
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.717
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.717
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.717
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.717
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.717
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.717
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.717
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.717
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.717
Si019578m.g Setaria italica Si019578m.g I 0.717
F775_02052 Aegilops tauschii F775_02052 I 0.717
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.717
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.717
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.717
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.717
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.717
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.717
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.717
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.717
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.717
OS10G0162600 Oryza sativa OS10G0162600 I 0.717
Bra000257 Brassica rapa Bra000257 I 0.717
Bo3g036030 Brassica oleracea Bo3g036030 I 0.717
28428.m000040 Ricinus communis 28428.m000040 I 0.717
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.717
mgf020773m Mimulus guttatus mgf020773m I 0.717
Pm017935 Prunus mume Pm017935 I 0.717
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.717
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.717
Ca_07763 Cicer arietinum Ca_07763 I 0.717
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.717
TCM_004103 Theobroma cacao TCM_004103 I 0.716
mgf026090m Mimulus guttatus mgf026090m I 0.712
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.709
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.707
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.707
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.707
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.707
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.707
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.707
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I 0.707
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.707
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.707
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.707
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.707
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.707
LBD29 Arabidopsis thaliana AT3G58190 I 0.707
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.707
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.707
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.707
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I 0.707
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.707
SapurV1A.0006s0970 Salix purpurea SapurV1A.0006s0970 I 0.707
MDP0000429067 Malus domestica MDP0000429067 I 0.707
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.707
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.707
Si040019m.g Setaria italica Si040019m.g I 0.707
Solyc09g066270.2 Solanum lycopersicum Solyc09g066270.2 I 0.707
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.707
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.707
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.707
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.707
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.707
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.707
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.707
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.707
Pm020627 Prunus mume Pm020627 I 0.707
Cla006087 Citrullus lanatus Cla006087 I 0.707
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.707
PRUPE_ppa019939mg Prunus persica PRUPE_ppa019939mg I 0.707
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.707
OBART03G03830 Oryza barthii OBART03G03830 I 0.707
Lus10000707.g Linum usitatissimum Lus10000707.g I 0.707
OB08G30680 Oryza brachyantha OB08G30680 I 0.707
OB03G13890 Oryza brachyantha OB03G13890 I 0.707
MDP0000254224 Malus domestica MDP0000254224 I 0.707
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.707
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.707
OS03G0149100 Oryza sativa OS03G0149100 I 0.707
PGSC0003DMG400009716 Solanum tuberosum PGSC0003DMG400009716 I 0.707
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.707
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.707
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.707
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.707