chr2.CM1032.110.nc (Lotus japonicus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 chr2.CM1032.110.nc T247412_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG

CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.828 0.828
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG

CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.828 0.828
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM1032.110.nc LOB 42 140

Links

Other LOB family TFs
Other Lotus japonicus TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LBD13 Arabidopsis thaliana AT2G30340 D 0.828
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.939
mgf026046m Mimulus guttatus mgf026046m I 0.717
mgf020556m Mimulus guttatus mgf020556m I 0.869
mgf011471m Mimulus guttatus mgf011471m I 0.869
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.859
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.859
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.848
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.899
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.919
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.939
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.828
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.859
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.899
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.717
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.869
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.818
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.939
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.939
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.828
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.859
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.929
Ca_12420 Cicer arietinum Ca_12420 I 0.899
Ca_04126 Cicer arietinum Ca_04126 I 0.919
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.717
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.939
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.838
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.848
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.904
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.838
Ca_15642 Cicer arietinum Ca_15642 I 0.859
Cla006731 Citrullus lanatus Cla006731 I 0.709
Cla007391 Citrullus lanatus Cla007391 I 0.899
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.707
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.939
30169.m006340 Ricinus communis 30169.m006340 I 0.707
29957.m001411 Ricinus communis 29957.m001411 I 0.879
29729.m002335 Ricinus communis 29729.m002335 I 0.919
Pm019028 Prunus mume Pm019028 I 0.873
Pm000277 Prunus mume Pm000277 I 0.848
Cla013678 Citrullus lanatus Cla013678 I 0.707
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.859
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.939
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.853
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.859
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.869
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.727
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.859
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.707
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.828
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.929
PK03716.1 Cannabis sativa PK03716.1 I 0.765
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.843
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.909
PK29334.1 Cannabis sativa PK29334.1 I 0.703
PK21617.1 Cannabis sativa PK21617.1 I 0.913
PK17217.1 Cannabis sativa PK17217.1 I 0.939
PK17019.1 Cannabis sativa PK17019.1 I 0.706
PK11564.1 Cannabis sativa PK11564.1 I 0.707
PK05388.1 Cannabis sativa PK05388.1 I 0.857
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.707
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.848
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.899
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.909
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.939
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.889
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.879
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.929
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.830
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.899
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.899
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.798
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.828
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.848
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.717
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.869
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.899
MDP0000278334 Malus domestica MDP0000278334 I 0.909
MDP0000167580 Malus domestica MDP0000167580 I 0.900
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.808
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.889
OB05G14280 Oryza brachyantha OB05G14280 I 0.908
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.889
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.848
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.838
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.723
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.889
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.929
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.929
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.869
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.869
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.848
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.879
OB01G44400 Oryza brachyantha OB01G44400 I 0.848
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.909
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.879
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.889
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.859
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.848
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.859
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.848
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.939
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.838
Bo4g190140 Brassica oleracea Bo4g190140 I 0.763
Bo4g172950 Brassica oleracea Bo4g172950 I 0.838
Bo4g059520 Brassica oleracea Bo4g059520 I 0.828
Bo4g012620 Brassica oleracea Bo4g012620 I 0.909
Bo3g034980 Brassica oleracea Bo3g034980 I 0.929
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.879
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.848
LBD15 Arabidopsis thaliana AT2G40470 I 0.939
Bo4g190210 Brassica oleracea Bo4g190210 I 0.919
Bra000188 Brassica rapa Bra000188 I 0.929
Bra004572 Brassica rapa Bra004572 I 0.909
F775_52636 Aegilops tauschii F775_52636 I 0.859
F775_33210 Aegilops tauschii F775_33210 I 0.712
F775_25790 Aegilops tauschii F775_25790 I 0.848
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.838
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.838
Bra021627 Brassica rapa Bra021627 I 0.838
Bra018320 Brassica rapa Bra018320 I 0.828
Bra016992 Brassica rapa Bra016992 I 0.909
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.939
OBART01G35680 Oryza barthii OBART01G35680 I 0.848
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.859
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.818
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.818
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.859
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.838
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.848
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.939
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.869
Si004575m.g Setaria italica Si004575m.g I 0.848
Si012018m.g Setaria italica Si012018m.g I 0.869
Si037583m.g Setaria italica Si037583m.g I 0.707
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.859
TCM_045438 Theobroma cacao TCM_045438 I 0.939
TCM_042262 Theobroma cacao TCM_042262 I 0.889
TCM_032557 Theobroma cacao TCM_032557 I 0.707
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.707
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.848
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.909
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.869
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.859
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.919
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.879
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.848
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.879
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.848
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.894
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.848
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.879
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.848
OBART05G04570 Oryza barthii OBART05G04570 I 0.879
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.848
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.848
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.838
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.909
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.859
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.707
OS05G0165450 Oryza sativa OS05G0165450 I 0.879
OS01G0825000 Oryza sativa OS01G0825000 I 0.848
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.879
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.848
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.879
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.712
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.746