chr2.LjT16G06.10.nd (Lotus japonicus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 chr2.LjT16G06.10.nd T247415_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.778 0.778
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.LjT16G06.10.nd LOB 11 109

Links

Other LOB family TFs
Other Lotus japonicus TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.980
GLYMA11G06210 Glycine max GLYMA11G06210 I 0.970
MTR_5g017950 Medicago truncatula MTR_5g017950 I 0.949
Ca_02124 Cicer arietinum Ca_02124 I 0.909
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.899
Ca_02125 Cicer arietinum Ca_02125 I 0.899
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.889
GLYMA04G11991 Glycine max GLYMA04G11991 I 0.889
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.879
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.869
TCM_000560 Theobroma cacao TCM_000560 I 0.869
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.859
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.859
Ca_11161 Cicer arietinum Ca_11161 I 0.859
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.859
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I 0.848
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.848
Cla020438 Citrullus lanatus Cla020438 I 0.848
MDP0000562305 Malus domestica MDP0000562305 I 0.848
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.848
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.838
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.838
GLYMA05G09950 Glycine max GLYMA05G09950 I 0.838
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.838
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.838
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.838
Pm026450 Prunus mume Pm026450 I 0.838
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.838
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.838
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.838
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.838
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.838
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.838
F775_33210 Aegilops tauschii F775_33210 I 0.836
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.833
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.828
mgf004296m Mimulus guttatus mgf004296m I 0.828
Bra012112 Brassica rapa Bra012112 I 0.828
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.828
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.828
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.828
Bo7g064360 Brassica oleracea Bo7g064360 I 0.828
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.828
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.828
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.828
PK18922.1 Cannabis sativa PK18922.1 I 0.825
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.818
Pm010483 Prunus mume Pm010483 I 0.818
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.818
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.818
LBD36 Arabidopsis thaliana AT5G66870 I 0.818
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.818
MDP0000310871 Malus domestica MDP0000310871 I 0.818
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.808
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.808
Bo2g167820 Brassica oleracea Bo2g167820 I 0.808
29676.m001633 Ricinus communis 29676.m001633 I 0.808
MDP0000777060 Malus domestica MDP0000777060 I 0.808
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.798
VIT_07s0197g00040 Vitis vinifera VIT_07s0197g00040 I 0.798
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.798
PK13228.1 Cannabis sativa PK13228.1 I 0.797
AS2 Vitis vinifera VIT_00s0340g00090 I 0.788
Lus10005313.g Linum usitatissimum Lus10005313.g I 0.788
MTR_3g452660 Medicago truncatula MTR_3g452660 N 0.788
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.787
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.785
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.778
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.778
LBD6 Arabidopsis thaliana AT1G65620 D 0.778
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.778
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.778
TCM_024217 Theobroma cacao TCM_024217 I 0.778
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.778
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.778
Bra039733 Brassica rapa Bra039733 I 0.778
Bo2g051420 Brassica oleracea Bo2g051420 I 0.778
Ca_18206 Cicer arietinum Ca_18206 N 0.778
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.778
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.778
mgf014755m Mimulus guttatus mgf014755m I 0.778
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.778
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.778
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.778
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.778
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.778
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.778
cassava16840.m1 Manihot esculenta cassava16840.m1 I 0.778
MDP0000273432 Malus domestica MDP0000273432 I 0.778
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.778
MDP0000197526 Malus domestica MDP0000197526 I 0.778
29929.m004500 Ricinus communis 29929.m004500 I 0.778
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.768
MDP0000643326 Malus domestica MDP0000643326 I 0.768
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.768
SapurV1A.0811s0010 Salix purpurea SapurV1A.0811s0010 I 0.768
Si036905m.g Setaria italica Si036905m.g I 0.768
VIT_07s0197g00030 Vitis vinifera VIT_07s0197g00030 I 0.768
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.768
Traes_4BS_C1F4F41E9 Triticum aestivum Traes_4BS_C1F4F41E9 I 0.768
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.768
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.768
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.768
Traes_4DS_72ABC3EE5 Triticum aestivum Traes_4DS_72ABC3EE5 I 0.768
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.768
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.768
F775_21760 Aegilops tauschii F775_21760 I 0.768
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.768
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.768
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.768
TRIUR3_06488 Triticum urartu TRIUR3_06488 I 0.760
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.758
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.758
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.758
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.758
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.758
OB05G24560 Oryza brachyantha OB05G24560 I 0.758
Cla005851 Citrullus lanatus Cla005851 I 0.758
Traes_4AL_C060BF9F6 Triticum aestivum Traes_4AL_C060BF9F6 I 0.758
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.758
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.758
OS05G0417000 Oryza sativa OS05G0417000 I 0.758
Si002599m.g Setaria italica Si002599m.g I 0.758
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.758
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.758
Pavir.J09541 Panicum virgatum Pavir.J09541 I 0.758
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.758
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.747
Ca_20200 Cicer arietinum Ca_20200 I 0.747
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.747
GRMZM2G362627 Zea mays GRMZM2G362627 I 0.747
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.747
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.747
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.747
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.747
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.747
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.747
Sb01g014650 Sorghum bicolor Sb01g014650 I 0.747
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.738
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.737
OB01G48740 Oryza brachyantha OB01G48740 I 0.737
LBD6 Oryza indica BGIOSGA004955 I 0.737
OBART01G04470 Oryza barthii OBART01G04470 I 0.737
OBART01G39990 Oryza barthii OBART01G39990 I 0.737
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.737
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.737
F775_20715 Aegilops tauschii F775_20715 I 0.737
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.737
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.737
BRADI1G14677 Brachypodium distachyon BRADI1G14677 N 0.737
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.737
Bo4g151770 Brassica oleracea Bo4g151770 I 0.737
Bra032153 Brassica rapa Bra032153 I 0.737
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.737
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.737
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.737
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.737
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.737
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.737
LBD6 Oryza sativa OS01G0889400 I 0.737
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.737
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.737
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.737
OS01G0169400 Oryza sativa OS01G0169400 I 0.737
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.737
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.737
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.737
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.737
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.737
Si024114m.g Setaria italica Si024114m.g I 0.737
GSMUA_Achr7G23710_001 Musa acuminata GSMUA_Achr7G23710_001 I 0.733
OB01G14220 Oryza brachyantha OB01G14220 I 0.727
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.727
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.727
Si002632m.g Setaria italica Si002632m.g I 0.727
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.727
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.727
LBD10 Arabidopsis thaliana AT2G23660 I 0.727
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.727
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.727
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.727
LBD10 Arabidopsis lyrata scaffold_400352.1 I 0.727
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.727
F775_25656 Aegilops tauschii F775_25656 I 0.727
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.727
Cla003499 Citrullus lanatus Cla003499 I 0.727
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.723
OGLUM03G26820 Oryza glumaepatula OGLUM03G26820 I 0.717
OS03G0612400 Oryza sativa OS03G0612400 I 0.717
Cagra.2475s0001 Capsella grandiflora Cagra.2475s0001 I 0.717
Carubv10025704m.g Capsella rubella Carubv10025704m.g I 0.717
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.717
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.717
PK21617.1 Cannabis sativa PK21617.1 I 0.717
BGIOSGA013119 Oryza indica BGIOSGA013119 I 0.717
Thhalv10000525m.g Eutrema salsugineum Thhalv10000525m.g I 0.717
ORUFI03G26840 Oryza rufipogon ORUFI03G26840 I 0.717
ONIVA11G15310 Oryza nivara ONIVA11G15310 I 0.717
GRMZM2G154320 Zea mays GRMZM2G154320 N 0.717
GRMZM2G133806 Zea mays GRMZM2G133806 I 0.717
ORGLA03G0240600 Oryza glaberrima ORGLA03G0240600 I 0.717
Ca_09248 Cicer arietinum Ca_09248 N 0.717
GSMUA_Achr2G13400_001 Musa acuminata GSMUA_Achr2G13400_001 I 0.710
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.707
Ca_08824 Cicer arietinum Ca_08824 I 0.707
30147.m013890 Ricinus communis 30147.m013890 I 0.707
TCM_012190 Theobroma cacao TCM_012190 I 0.707
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.707
Si026864m.g Setaria italica Si026864m.g I 0.707
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.707
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.707
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.707
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.707
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.707
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.707
Cla019510 Citrullus lanatus Cla019510 I 0.707
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.707
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.707
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.707
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.707
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.707
MDP0000254288 Malus domestica MDP0000254288 I 0.707
LOB Vitis vinifera VIT_17s0000g09010 I 0.707
MDP0000130659 Malus domestica MDP0000130659 I 0.707
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.707
OB03G34080 Oryza brachyantha OB03G34080 I 0.707
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.707
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
mgf016361m Mimulus guttatus mgf016361m I 0.707
Pm024312 Prunus mume Pm024312 I 0.707
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.707
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.707
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.707
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.707
PK17019.1 Cannabis sativa PK17019.1 I 0.706
PK29334.1 Cannabis sativa PK29334.1 I 0.703