chr3.CM0176.110.nc (Lotus japonicus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 chr3.CM0176.110.nc T247421_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN

NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.889 0.889
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN

NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.848 0.848
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr3.CM0176.110.nc LOB 14 113

Links

Other LOB family TFs
Other Lotus japonicus TFs

283 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.929
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.929
MDP0000121203 Malus domestica MDP0000121203 I 0.929
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.919
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.919
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.909
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.909
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.909
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.909
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.909
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.909
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.909
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.909
TCM_029315 Theobroma cacao TCM_029315 I 0.909
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.899
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.899
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.899
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.899
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.899
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.899
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.899
Ca_06548 Cicer arietinum Ca_06548 I 0.899
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.899
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.899
TCM_032557 Theobroma cacao TCM_032557 I 0.889
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.889
MDP0000268890 Malus domestica MDP0000268890 I 0.889
Ca_13575 Cicer arietinum Ca_13575 I 0.889
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.889
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.889
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.889
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.889
MDP0000284409 Malus domestica MDP0000284409 I 0.889
Pm011040 Prunus mume Pm011040 I 0.889
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.889
LBD4 Arabidopsis thaliana AT1G31320 D 0.889
Bra014907 Brassica rapa Bra014907 I 0.889
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.889
PK24688.1 Cannabis sativa PK24688.1 I 0.889
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.889
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.889
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.889
30169.m006340 Ricinus communis 30169.m006340 I 0.889
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.889
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.889
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.889
Bo7g041000 Brassica oleracea Bo7g041000 I 0.879
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.879
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.879
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.879
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.879
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.879
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.879
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.879
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.879
Cla009336 Citrullus lanatus Cla009336 I 0.879
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.879
mgf022958m Mimulus guttatus mgf022958m I 0.869
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.869
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.869
Cla013678 Citrullus lanatus Cla013678 I 0.869
PK11564.1 Cannabis sativa PK11564.1 I 0.869
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.869
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.869
Cucsa.236600 Cucumis sativus Cucsa.236600 I 0.869
mgf026046m Mimulus guttatus mgf026046m I 0.859
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.859
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.859
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.859
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.859
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.848
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.848
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.846
orange1.1g041989m.g Citrus sinensis orange1.1g041989m.g I 0.828
Ciclev10006208m.g Citrus clementina Ciclev10006208m.g I 0.828
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.828
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.828
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.818
Si037583m.g Setaria italica Si037583m.g I 0.818
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.808
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.808
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.808
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.808
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.808
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.808
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.808
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.808
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.808
e_gw1.192.35.1 Physcomitrella patens e_gw1.192.35.1 I 0.808
PGSC0003DMG402023851 Solanum tuberosum PGSC0003DMG402023851 I 0.798
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.798
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.798
GLYMA14G06140 Glycine max GLYMA14G06140 I 0.798
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.798
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.798
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.798
PRUPE_ppa012275mg Prunus persica PRUPE_ppa012275mg I 0.788
MDP0000265429 Malus domestica MDP0000265429 I 0.788
Pm000193 Prunus mume Pm000193 I 0.788
Ca_12450 Cicer arietinum Ca_12450 I 0.788
GSMUA_Achr10G14880_001 Musa acuminata GSMUA_Achr10G14880_001 I 0.788
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.788
GSMUA_Achr10G13050_001 Musa acuminata GSMUA_Achr10G13050_001 I 0.788
GLYMA18G02780 Glycine max GLYMA18G02780 I 0.788
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I 0.788
Si026864m.g Setaria italica Si026864m.g I 0.788
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.788
Solyc12g100150.1 Solanum lycopersicum Solyc12g100150.1 I 0.788
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.778
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.778
BGIOSGA018244 Oryza indica BGIOSGA018244 I 0.778
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.778
29729.m002278 Ricinus communis 29729.m002278 I 0.778
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.778
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.778
Traes_1AL_DB7593004 Triticum aestivum Traes_1AL_DB7593004 I 0.778
Traes_1BL_04EFBAECF Triticum aestivum Traes_1BL_04EFBAECF I 0.778
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.778
Si024229m.g Setaria italica Si024229m.g I 0.778
Pm018982 Prunus mume Pm018982 I 0.778
ORUFI05G13610 Oryza rufipogon ORUFI05G13610 I 0.778
OMERI05G11330 Oryza meridionalis OMERI05G11330 I 0.778
OGLUM05G13250 Oryza glumaepatula OGLUM05G13250 I 0.778
LPERR12G00030 Leersia perrieri LPERR12G00030 I 0.778
ONIVA05G13090 Oryza nivara ONIVA05G13090 I 0.778
MLOC_54949 Hordeum vulgare MLOC_54949 I 0.778
LPERR05G10020 Leersia perrieri LPERR05G10020 I 0.778
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.778
Pavir.J21476 Panicum virgatum Pavir.J21476 I 0.778
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.778
MDP0000861160 Malus domestica MDP0000861160 I 0.778
OB05G20740 Oryza brachyantha OB05G20740 I 0.778
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.778
OBART05G12620 Oryza barthii OBART05G12620 I 0.778
ORGLA05G0108100 Oryza glaberrima ORGLA05G0108100 I 0.778
OPUNC05G10670 Oryza punctata OPUNC05G10670 I 0.778
Pavir.J22399 Panicum virgatum Pavir.J22399 I 0.778
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.778
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.778
BGIOSGA018245 Oryza indica BGIOSGA018245 I 0.778
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I 0.778
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.778
GSMUA_Achr6G15660_001 Musa acuminata GSMUA_Achr6G15660_001 I 0.778
OS05G0346800 Oryza sativa OS05G0346800 I 0.778
Pavir.Ca01985 Panicum virgatum Pavir.Ca01985 I 0.778
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.778
Bo4g059700 Brassica oleracea Bo4g059700 I 0.768
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.768
Cla007354 Citrullus lanatus Cla007354 I 0.768
ASL5 Vitis vinifera VIT_06s0004g07200 I 0.768
Cla005598 Citrullus lanatus Cla005598 I 0.768
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.768
TCM_042212 Theobroma cacao TCM_042212 I 0.768
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.768
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.768
Cucsa.144430 Cucumis sativus Cucsa.144430 I 0.768
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.768
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.768
LBD12 Arabidopsis thaliana AT2G30130 I 0.768
Bra018335 Brassica rapa Bra018335 I 0.768
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.768
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.768
mgf019461m Mimulus guttatus mgf019461m I 0.768
TCM_042447 Theobroma cacao TCM_042447 I 0.768
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.768
Bostr.29246s0022 Boechera stricta Bostr.29246s0022 I 0.768
mgf018189m Mimulus guttatus mgf018189m I 0.768
Thhalv10009386m.g Eutrema salsugineum Thhalv10009386m.g I 0.758
PDK_20s1810211g001 Phoenix dactylifera PDK_20s1810211g001 I 0.758
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.758
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.758
MDP0000194766 Malus domestica MDP0000194766 I 0.758
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.758
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.758
Eucgr.G03089 Eucalyptus grandis Eucgr.G03089 I 0.758
Cagra.0824s0026 Capsella grandiflora Cagra.0824s0026 I 0.758
Lus10031285.g Linum usitatissimum Lus10031285.g I 0.758
MDP0000155138 Malus domestica MDP0000155138 I 0.758
LBD3 Arabidopsis thaliana AT1G16530 I 0.758
LBD3 Arabidopsis lyrata Al_scaffold_0001_1711 I 0.758
Traes_4BS_E9E0C550B Triticum aestivum Traes_4BS_E9E0C550B I 0.758
Traes_4DS_DA077BB06 Triticum aestivum Traes_4DS_DA077BB06 I 0.758
Bo3g024350 Brassica oleracea Bo3g024350 I 0.758
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.758
GSMUA_Achr5G02190_001 Musa acuminata GSMUA_Achr5G02190_001 I 0.758
LPERR11G00440 Leersia perrieri LPERR11G00440 I 0.758
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.758
GLYMA18G06530 Glycine max GLYMA18G06530 I 0.758
TRIUR3_11841 Triticum urartu TRIUR3_11841 I 0.758
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.758
Bra022780 Brassica rapa Bra022780 I 0.758
Bra021612 Brassica rapa Bra021612 I 0.758
POPTR_0001s28840 Populus trichocarpa POPTR_0001s28840 I 0.758
Ca_08998 Cicer arietinum Ca_08998 I 0.758
Bra026042 Brassica rapa Bra026042 I 0.758
Bo4g170770 Brassica oleracea Bo4g170770 I 0.758
OMERI01G39870 Oryza meridionalis OMERI01G39870 I 0.756
OB11G10200 Oryza brachyantha OB11G10200 I 0.747
OB12G10480 Oryza brachyantha OB12G10480 I 0.747
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.747
Lus10031855.g Linum usitatissimum Lus10031855.g I 0.747
OBART03G28270 Oryza barthii OBART03G28270 I 0.747
GSMUA_Achr4G32000_001 Musa acuminata GSMUA_Achr4G32000_001 I 0.747
GLYMA11G29450 Glycine max GLYMA11G29450 I 0.747
PDK_20s1728161g001 Phoenix dactylifera PDK_20s1728161g001 I 0.747
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.747
GSMUA_Achr2G13170_001 Musa acuminata GSMUA_Achr2G13170_001 I 0.747
GSMUA_Achr9G18030_001 Musa acuminata GSMUA_Achr9G18030_001 I 0.747
GSMUA_Achr7G00880_001 Musa acuminata GSMUA_Achr7G00880_001 I 0.747
orange1.1g038565m.g Citrus sinensis orange1.1g038565m.g I 0.747
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.747
Bostr.7128s0261 Boechera stricta Bostr.7128s0261 I 0.747
Ca_13388 Cicer arietinum Ca_13388 I 0.747
Traes_4AL_AD9C8CB77 Triticum aestivum Traes_4AL_AD9C8CB77 I 0.747
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.747
Bo5g021980 Brassica oleracea Bo5g021980 I 0.747
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I 0.737
Gorai.004G234100 Gossypium raimondii Gorai.004G234100 I 0.737
F775_08326 Aegilops tauschii F775_08326 I 0.737
MTR_3g031660 Medicago truncatula MTR_3g031660 I 0.737
ORGLA12G0001500 Oryza glaberrima ORGLA12G0001500 I 0.737
MDP0000277239 Malus domestica MDP0000277239 I 0.737
OGLUM12G00350 Oryza glumaepatula OGLUM12G00350 I 0.737
PDK_20s1342451g001 Phoenix dactylifera PDK_20s1342451g001 I 0.737
cassava2872.m1 Manihot esculenta cassava2872.m1 I 0.737
Bo8g105450 Brassica oleracea Bo8g105450 I 0.737
Si011647m.g Setaria italica Si011647m.g I 0.727
SapurV1A.0566s0080 Salix purpurea SapurV1A.0566s0080 I 0.727
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.727
BGIOSGA036857 Oryza indica BGIOSGA036857 I 0.727
BGIOSGA034653 Oryza indica BGIOSGA034653 I 0.727
ORGLA11G0005800 Oryza glaberrima ORGLA11G0005800 I 0.727
OS11G0106900 Oryza sativa OS11G0106900 I 0.727
Lus10017431.g Linum usitatissimum Lus10017431.g I 0.727
Lus10007525.g Linum usitatissimum Lus10007525.g I 0.727
OS12G0106200 Oryza sativa OS12G0106200 I 0.727
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.727
PGSC0003DMG400023939 Solanum tuberosum PGSC0003DMG400023939 I 0.717
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.717
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.717
Solyc06g050950.2 Solanum lycopersicum Solyc06g050950.2 I 0.717
SELMODRAFT_48892 Selaginella moellendorffii SELMODRAFT_48892 I 0.717
GRMZM5G873586 Zea mays GRMZM5G873586 I 0.717
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.717
OPUNC12G00430 Oryza punctata OPUNC12G00430 I 0.717
Bra026716 Brassica rapa Bra026716 I 0.717
GSMUA_Achr3G10050_001 Musa acuminata GSMUA_Achr3G10050_001 I 0.717
GSMUA_Achr8G02800_001 Musa acuminata GSMUA_Achr8G02800_001 I 0.717
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.717
SELMODRAFT_59179 Selaginella moellendorffii SELMODRAFT_59179 I 0.717
GSMUA_Achr5G29470_001 Musa acuminata GSMUA_Achr5G29470_001 I 0.717
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.707
Ca_04287 Cicer arietinum Ca_04287 I 0.707
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.707
F775_25656 Aegilops tauschii F775_25656 I 0.707
F775_24149 Aegilops tauschii F775_24149 I 0.707
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.707
Cla013598 Citrullus lanatus Cla013598 I 0.707
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.707
TRIUR3_27421 Triticum urartu TRIUR3_27421 I 0.707
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.707
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.707
Gorai.009G112900 Gossypium raimondii Gorai.009G112900 I 0.707
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.707
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.707
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.707
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.707
OS01G0169400 Oryza sativa OS01G0169400 I 0.707
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.707
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.707
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.707
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.707
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.707
Si002632m.g Setaria italica Si002632m.g I 0.707
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.707
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.707
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.707
OB01G14220 Oryza brachyantha OB01G14220 I 0.707
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.707
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.707
OBART01G04470 Oryza barthii OBART01G04470 I 0.707
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.707
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.707