chr3.CM0246.260.nc (Lotus japonicus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 chr3.CM0246.260.nc T247422_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr3.CM0246.260.nc LOB 36 134

Links

Other LOB family TFs
Other Lotus japonicus TFs

189 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCM_041094 Theobroma cacao TCM_041094 I 0.949
30111.m000703 Ricinus communis 30111.m000703 I 0.949
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.949
Ca_14605 Cicer arietinum Ca_14605 I 0.939
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.939
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.939
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.939
Pm000938 Prunus mume Pm000938 I 0.929
MDP0000318244 Malus domestica MDP0000318244 I 0.929
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.929
PK27389.1 Cannabis sativa PK27389.1 I 0.929
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.929
MDP0000218986 Malus domestica MDP0000218986 I 0.929
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.929
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.929
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.929
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.929
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.919
MDP0000319331 Malus domestica MDP0000319331 I 0.919
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.919
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.909
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.909
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.909
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.909
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.909
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.909
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.909
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.909
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.909
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.899
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.899
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.899
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.899
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.899
TCM_043081 Theobroma cacao TCM_043081 I 0.899
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.899
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.899
Cla000556 Citrullus lanatus Cla000556 I 0.899
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.897
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.889
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.889
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.889
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.889
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.889
PK23777.1 Cannabis sativa PK23777.1 I 0.889
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.889
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.889
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.889
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.889
LBD11 Arabidopsis thaliana AT2G28500 N 0.889
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.889
Pm018585 Prunus mume Pm018585 I 0.889
Cla005134 Citrullus lanatus Cla005134 N 0.889
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.889
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.889
Ca_04287 Cicer arietinum Ca_04287 I 0.889
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.879
Bra018675 Brassica rapa Bra018675 N 0.879
Bra000491 Brassica rapa Bra000491 N 0.879
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.879
mgf015666m Mimulus guttatus mgf015666m N 0.879
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.879
Bo01039s010 Brassica oleracea Bo01039s010 N 0.879
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.879
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.879
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.879
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.879
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.879
Bo5g008590 Brassica oleracea Bo5g008590 N 0.879
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.879
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.869
Bo4g165420 Brassica oleracea Bo4g165420 N 0.869
MDP0000879799 Malus domestica MDP0000879799 N 0.869
Bra035698 Brassica rapa Bra035698 N 0.869
Bra011942 Brassica rapa Bra011942 N 0.869
Cla020379 Citrullus lanatus Cla020379 I 0.869
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.869
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.869
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.869
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.869
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.869
MDP0000151784 Malus domestica MDP0000151784 I 0.869
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.869
MDP0000123013 Malus domestica MDP0000123013 I 0.869
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.869
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.869
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.869
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.859
Bo3g040220 Brassica oleracea Bo3g040220 N 0.859
OB05G11740 Oryza brachyantha OB05G11740 I 0.859
Ca_02507 Cicer arietinum Ca_02507 N 0.859
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.859
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.849
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.848
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.848
MDP0000822986 Malus domestica MDP0000822986 I 0.848
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.848
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.848
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.838
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.838
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.838
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.838
Bo8g112780 Brassica oleracea Bo8g112780 N 0.838
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.838
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.838
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.838
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.838
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.830
Si024430m.g Setaria italica Si024430m.g N 0.828
Bra031599 Brassica rapa Bra031599 N 0.828
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.828
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.828
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.828
mgf022524m Mimulus guttatus mgf022524m N 0.828
OBART05G01640 Oryza barthii OBART05G01640 N 0.827
Eucgr.E02410 Eucalyptus grandis Eucgr.E02410 N 0.825
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.824
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.818
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.818
OS03G0287400 Oryza sativa OS03G0287400 N 0.818
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.818
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.818
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.818
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.818
OBART03G13260 Oryza barthii OBART03G13260 N 0.818
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.818
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.818
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.818
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.818
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.818
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.818
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.808
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.808
Si037280m.g Setaria italica Si037280m.g N 0.808
Cla005133 Citrullus lanatus Cla005133 N 0.808
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.808
OB03G23270 Oryza brachyantha OB03G23270 N 0.808
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.808
mgf019622m Mimulus guttatus mgf019622m N 0.798
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.798
F775_02335 Aegilops tauschii F775_02335 N 0.798
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.798
OS05G0123000 Oryza sativa OS05G0123000 I 0.789
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I 0.789
BGIOSGA018905 Oryza indica BGIOSGA018905 I 0.789
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.788
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.788
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.788
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.788
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.787
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.768
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.768
PK17019.1 Cannabis sativa PK17019.1 I 0.765
OPUNC05G01600 Oryza punctata OPUNC05G01600 N 0.763
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.758
OMERI05G01730 Oryza meridionalis OMERI05G01730 N 0.750
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.747
GSMUA_Achr9G04330_001 Musa acuminata GSMUA_Achr9G04330_001 N 0.737
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.737
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.737
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.737
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.737
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.737
VIT_13s0019g03800 Vitis vinifera VIT_13s0019g03800 N 0.736
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.731
VIT_13s0019g03810 Vitis vinifera VIT_13s0019g03810 N 0.727
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.727
Cucsa.275710 Cucumis sativus Cucsa.275710 N 0.727
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.717
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.717
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.717
mgf018189m Mimulus guttatus mgf018189m I 0.717
cassava4159.m1 Manihot esculenta cassava4159.m1 N 0.712
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.707
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.707
Ca_13575 Cicer arietinum Ca_13575 I 0.707
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.707
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.707
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.707
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.707
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.707
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.707
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N 0.707
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.707
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.707
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.707
Cla005598 Citrullus lanatus Cla005598 I 0.707
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N 0.707
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.707