chr3.LjT44N20.90.nd (Lotus japonicus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 chr3.LjT44N20.90.nd T247423_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND

HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.802 0.802
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG

CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.802 0.802
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.791 0.791
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.791 0.791
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.769 0.769
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.769 0.769
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.725 0.725
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.725 0.725
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.725 0.725
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr3.LjT44N20.90.nd LOB 12 103

Links

Other LOB family TFs
Other Lotus japonicus TFs

198 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.890
MDP0000429067 Malus domestica MDP0000429067 I 0.868
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.868
Ca_20429 Cicer arietinum Ca_20429 I 0.865
PK25573.1 Cannabis sativa PK25573.1 I 0.857
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.857
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.846
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.846
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.844
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.840
OS03G0246900 Oryza sativa OS03G0246900 I 0.835
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.835
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.835
OBART03G10450 Oryza barthii OBART03G10450 I 0.835
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.835
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.835
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.835
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.835
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.835
MDP0000254224 Malus domestica MDP0000254224 I 0.835
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.835
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.835
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.835
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.835
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.835
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.835
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.828
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.824
OB03G20590 Oryza brachyantha OB03G20590 I 0.824
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.824
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.824
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.824
OB10G12360 Oryza brachyantha OB10G12360 I 0.824
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.824
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.819
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.818
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.818
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.818
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.818
TCM_005496 Theobroma cacao TCM_005496 I 0.815
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.813
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.813
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.813
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.813
Pm017935 Prunus mume Pm017935 I 0.808
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.808
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.808
30174.m008897 Ricinus communis 30174.m008897 I 0.808
Ca_19598 Cicer arietinum Ca_19598 I 0.808
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.808
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.808
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.802
LBD19 Arabidopsis thaliana AT2G45410 D 0.802
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.802
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.802
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.798
TCM_005497 Theobroma cacao TCM_005497 I 0.798
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.798
Bo4g195510 Brassica oleracea Bo4g195510 I 0.798
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.791
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.791
LBD31 Arabidopsis thaliana AT4G00210 I 0.791
Cla007069 Citrullus lanatus Cla007069 I 0.788
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.788
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.780
Bra040312 Brassica rapa Bra040312 I 0.780
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.780
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.780
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.778
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.778
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.778
mgf020735m Mimulus guttatus mgf020735m I 0.778
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.778
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.769
LBD30 Arabidopsis thaliana AT4G00220 D 0.769
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.769
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.769
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.768
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.768
Pm017936 Prunus mume Pm017936 I 0.768
Cla007068 Citrullus lanatus Cla007068 I 0.768
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.768
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.768
30174.m008898 Ricinus communis 30174.m008898 I 0.768
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.768
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.768
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.768
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.768
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.768
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.768
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.758
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.758
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.758
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.758
Bo4g024610 Brassica oleracea Bo4g024610 I 0.758
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.758
Cla021625 Citrullus lanatus Cla021625 I 0.758
chr1.CM1255.90.nc Lotus japonicus chr1.CM1255.90.nc N 0.758
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.758
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.758
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.758
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.758
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.758
scaffold_403397.1 Arabidopsis lyrata scaffold_403397.1 I 0.753
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.747
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.747
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.747
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.747
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.747
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.747
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.747
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.747
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.747
OS10G0162600 Oryza sativa OS10G0162600 I 0.747
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.747
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.747
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.747
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.739
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.737
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.737
LBD31 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002970 N 0.737
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.737
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.737
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.736
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.736
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I 0.736
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.727
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.727
Bra040311 Brassica rapa Bra040311 I 0.727
LBD18 Arabidopsis thaliana AT2G45420 D 0.727
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.727
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.727
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.727
Bra004910 Brassica rapa Bra004910 I 0.727
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.727
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.727
Bo4g195520 Brassica oleracea Bo4g195520 I 0.727
Bo4g024620 Brassica oleracea Bo4g024620 I 0.727
Si019578m.g Setaria italica Si019578m.g I 0.725
Si015156m.g Setaria italica Si015156m.g I 0.725
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.725
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.725
OS02G0820500 Oryza sativa OS02G0820500 I 0.725
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.725
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.725
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.725
LBD20 Arabidopsis thaliana AT3G03760 I 0.725
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.725
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.725
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.725
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.725
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.725
Bra016877 Brassica rapa Bra016877 I 0.725
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.725
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.725
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.725
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.725
LBD16 Arabidopsis thaliana AT2G42430 D 0.725
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.725
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.725
PK23185.1 Cannabis sativa PK23185.1 I 0.725
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.724
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.724
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.721
Bra037322 Brassica rapa Bra037322 I 0.717
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.717
Bo9g002150 Brassica oleracea Bo9g002150 I 0.717
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.717
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.717
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.714
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.714
Pm028642 Prunus mume Pm028642 I 0.714
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.714
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.714
F775_04528 Aegilops tauschii F775_04528 I 0.714
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.714
F775_22967 Aegilops tauschii F775_22967 I 0.714
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.714
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.714
PGSC0003DMG400012757 Solanum tuberosum PGSC0003DMG400012757 I 0.712
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.711
Bo3g036000 Brassica oleracea Bo3g036000 I 0.710
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.707
Bo9g002160 Brassica oleracea Bo9g002160 I 0.707
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.707
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.707
Ca_20428 Cicer arietinum Ca_20428 I 0.707
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.707
Bra037323 Brassica rapa Bra037323 I 0.707
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.703
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.703
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.703
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.703
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.703
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.703
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.703
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.703
PK23380.1 Cannabis sativa PK23380.1 I 0.701