CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
chr3.LjT44N20.90.nd
(
Lotus japonicus
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
chr3.LjT44N20.90.nd
T247423_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.802
0.802
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG
CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.802
0.802
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.791
0.791
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.791
0.791
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.769
0.769
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.769
0.769
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.725
0.725
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.725
0.725
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.725
0.725
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
chr3.LjT44N20.90.nd
LOB
12
103
PCGACKFLRRKCVKGCIFAPYFDSEQGTAHFAAVHKVFGASNASKLLMKIPAHKRLDAVVTLCYEALARVRDPVYGCVGHIFFLQQQVYIFP
Links
Other
LOB
family TFs
Other
Lotus japonicus
TFs
198 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GLYMA03G02631
Glycine max
GLYMA03G02631
I
0.890
MDP0000429067
Malus domestica
MDP0000429067
I
0.868
SapurV1A.0024s0790
Salix purpurea
SapurV1A.0024s0790
I
0.868
Ca_20429
Cicer arietinum
Ca_20429
I
0.865
PK25573.1
Cannabis sativa
PK25573.1
I
0.857
Gorai.007G091600
Gossypium raimondii
Gorai.007G091600
I
0.857
Cucsa.362830
Cucumis sativus
Cucsa.362830
I
0.846
GSMUA_Achr5G11330_001
Musa acuminata
GSMUA_Achr5G11330_001
I
0.846
OLONG_001985
Oryza longistaminata
OLONG_001985
I
0.844
POPTR_0002s14980
Populus trichocarpa
POPTR_0002s14980
I
0.840
OS03G0246900
Oryza sativa
OS03G0246900
I
0.835
ORUFI03G10670
Oryza rufipogon
ORUFI03G10670
I
0.835
OPUNC03G10080
Oryza punctata
OPUNC03G10080
I
0.835
OBART03G10450
Oryza barthii
OBART03G10450
I
0.835
OGLUM03G10340
Oryza glumaepatula
OGLUM03G10340
I
0.835
OMERI03G09680
Oryza meridionalis
OMERI03G09680
I
0.835
ORGLA03G0100400
Oryza glaberrima
ORGLA03G0100400
I
0.835
SapurV1A.0532s0190
Salix purpurea
SapurV1A.0532s0190
I
0.835
Cagra.1261s0013
Capsella grandiflora
Cagra.1261s0013
I
0.835
MDP0000254224
Malus domestica
MDP0000254224
I
0.835
LPERR03G09330
Leersia perrieri
LPERR03G09330
I
0.835
AMTR_s00041p00044170
Amborella trichopoda
AMTR_s00041p00044170
I
0.835
MLOC_55239
Hordeum vulgare
MLOC_55239
I
0.835
BGIOSGA011118
Oryza indica
BGIOSGA011118
I
0.835
Traes_4AS_5971FF832
Triticum aestivum
Traes_4AS_5971FF832
I
0.835
Traes_4DL_A2012EA68
Triticum aestivum
Traes_4DL_A2012EA68
I
0.835
GLYMA01G34523
Glycine max
GLYMA01G34523
I
0.828
Thhalv10028924m.g
Eutrema salsugineum
Thhalv10028924m.g
I
0.824
OB03G20590
Oryza brachyantha
OB03G20590
I
0.824
POPTR_0002s14990
Populus trichocarpa
POPTR_0002s14990
I
0.824
orange1.1g041368m.g
Citrus sinensis
orange1.1g041368m.g
I
0.824
evm.TU.supercontig_18.118
Carica papaya
evm.TU.supercontig_18.118
I
0.824
OB10G12360
Oryza brachyantha
OB10G12360
I
0.824
POPTR_0014s06590
Populus trichocarpa
POPTR_0014s06590
I
0.824
PGSC0003DMG402012772
Solanum tuberosum
PGSC0003DMG402012772
I
0.819
MTR_8g036105
Medicago truncatula
MTR_8g036105
I
0.818
evm.TU.supercontig_18.117
Carica papaya
evm.TU.supercontig_18.117
I
0.818
PRUPE_ppa017589mg
Prunus persica
PRUPE_ppa017589mg
I
0.818
POPTR_0014s06580
Populus trichocarpa
POPTR_0014s06580
I
0.818
TCM_005496
Theobroma cacao
TCM_005496
I
0.815
SapurV1A.0024s0780
Salix purpurea
SapurV1A.0024s0780
I
0.813
OLONG_028429
Oryza longistaminata
OLONG_028429
I
0.813
Aquca_013_00578
Aquilegia coerulea
Aquca_013_00578
I
0.813
Gorai.008G114300
Gossypium raimondii
Gorai.008G114300
I
0.813
Pm017935
Prunus mume
Pm017935
I
0.808
SapurV1A.0532s0200
Salix purpurea
SapurV1A.0532s0200
I
0.808
Lus10009298.g
Linum usitatissimum
Lus10009298.g
I
0.808
30174.m008897
Ricinus communis
30174.m008897
I
0.808
Ca_19598
Cicer arietinum
Ca_19598
I
0.808
cassava28672.m1
Manihot esculenta
cassava28672.m1
I
0.808
gene19356-v1.0-hybrid
Fragaria vesca
gene19356-v1.0-hybrid
I
0.808
gene19355-v1.0-hybrid
Fragaria vesca
gene19355-v1.0-hybrid
I
0.802
LBD19
Arabidopsis thaliana
AT2G45410
D
0.802
Bostr.25993s0234
Boechera stricta
Bostr.25993s0234
I
0.802
GSMUA_AchrUn_randomG10470_001
Musa acuminata
GSMUA_AchrUn_randomG10470_001
I
0.802
VIT_15s0048g00840
Vitis vinifera
VIT_15s0048g00840
I
0.798
TCM_005497
Theobroma cacao
TCM_005497
I
0.798
cassava40137.m1
Manihot esculenta
cassava40137.m1
I
0.798
Bo4g195510
Brassica oleracea
Bo4g195510
I
0.798
Carubv10025477m.g
Capsella rubella
Carubv10025477m.g
I
0.791
Cagra.0698s0022
Capsella grandiflora
Cagra.0698s0022
I
0.791
LBD31
Arabidopsis thaliana
AT4G00210
I
0.791
Cla007069
Citrullus lanatus
Cla007069
I
0.788
GSMUA_Achr2G11240_001
Musa acuminata
GSMUA_Achr2G11240_001
I
0.788
GLYMA18G45320
Glycine max
GLYMA18G45320
I
0.780
Bra040312
Brassica rapa
Bra040312
I
0.780
Pavir.Ia03917
Panicum virgatum
Pavir.Ia03917
I
0.780
BRADI3G22510
Brachypodium distachyon
BRADI3G22510
I
0.780
Sb01g041130
Sorghum bicolor
Sb01g041130
I
0.778
BRADI1G68170
Brachypodium distachyon
BRADI1G68170
I
0.778
Pavir.J34872
Panicum virgatum
Pavir.J34872
I
0.778
mgf020735m
Mimulus guttatus
mgf020735m
I
0.778
GRMZM2G110913
Zea mays
GRMZM2G110913
I
0.778
Gorai.007G144400
Gossypium raimondii
Gorai.007G144400
I
0.769
LBD30
Arabidopsis thaliana
AT4G00220
D
0.769
Bostr.14547s0031
Boechera stricta
Bostr.14547s0031
I
0.769
Thhalv10001778m.g
Eutrema salsugineum
Thhalv10001778m.g
I
0.769
Cucsa.362840
Cucumis sativus
Cucsa.362840
I
0.768
cassava36912.valid.m1
Manihot esculenta
cassava36912.valid.m1
I
0.768
Pm017936
Prunus mume
Pm017936
I
0.768
Cla007068
Citrullus lanatus
Cla007068
I
0.768
Traes_4BL_3FB579782
Triticum aestivum
Traes_4BL_3FB579782
I
0.768
PRUPE_ppa010383mg
Prunus persica
PRUPE_ppa010383mg
I
0.768
30174.m008898
Ricinus communis
30174.m008898
I
0.768
cassava28659.m1
Manihot esculenta
cassava28659.m1
I
0.768
Aquca_013_00580
Aquilegia coerulea
Aquca_013_00580
I
0.768
Ciclev10021992m.g
Citrus clementina
Ciclev10021992m.g
I
0.768
GRMZM2G150594
Zea mays
GRMZM2G150594
I
0.768
orange1.1g036534m.g
Citrus sinensis
orange1.1g036534m.g
I
0.768
Carubv10002489m.g
Capsella rubella
Carubv10002489m.g
I
0.768
GSMUA_Achr1G02520_001
Musa acuminata
GSMUA_Achr1G02520_001
I
0.758
Gorai.001G251600
Gossypium raimondii
Gorai.001G251600
I
0.758
Gorai.008G114400
Gossypium raimondii
Gorai.008G114400
I
0.758
Gorai.004G161100
Gossypium raimondii
Gorai.004G161100
I
0.758
Bo4g024610
Brassica oleracea
Bo4g024610
I
0.758
Thhalv10028937m.g
Eutrema salsugineum
Thhalv10028937m.g
I
0.758
Cla021625
Citrullus lanatus
Cla021625
I
0.758
chr1.CM1255.90.nc
Lotus japonicus
chr1.CM1255.90.nc
N
0.758
Eucgr.E01415
Eucalyptus grandis
Eucgr.E01415
I
0.758
Sb01g024400
Sorghum bicolor
Sb01g024400
I
0.758
Bostr.14547s0030
Boechera stricta
Bostr.14547s0030
I
0.758
Eucgr.E01414
Eucalyptus grandis
Eucgr.E01414
I
0.758
LBD30
Vitis vinifera
VIT_15s0048g00830
I
0.758
scaffold_403397.1
Arabidopsis lyrata
scaffold_403397.1
I
0.753
MTR_7g075230
Medicago truncatula
MTR_7g075230
I
0.747
BGIOSGA032254
Oryza indica
BGIOSGA032254
I
0.747
gw1.42.84.1
Physcomitrella patens
gw1.42.84.1
I
0.747
Ciclev10022291m.g
Citrus clementina
Ciclev10022291m.g
I
0.747
GLYMA03G02620
Glycine max
GLYMA03G02620
I
0.747
Pavir.Ib02517
Panicum virgatum
Pavir.Ib02517
I
0.747
LjT35F15.70.nd
Lotus japonicus
LjT35F15.70.nd
I
0.747
ORGLA10G0025200
Oryza glaberrima
ORGLA10G0025200
I
0.747
ORUFI10G03180
Oryza rufipogon
ORUFI10G03180
I
0.747
OS10G0162600
Oryza sativa
OS10G0162600
I
0.747
OPUNC10G02630
Oryza punctata
OPUNC10G02630
I
0.747
OGLUM10G03230
Oryza glumaepatula
OGLUM10G03230
I
0.747
ONIVA10G03250
Oryza nivara
ONIVA10G03250
I
0.747
gw1.190.59.1
Physcomitrella patens
gw1.190.59.1
I
0.739
GLYMA01G34540
Glycine max
GLYMA01G34540
I
0.737
Pavir.Ia02614
Panicum virgatum
Pavir.Ia02614
I
0.737
LBD31
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002970
N
0.737
Solyc01g091420.1
Solanum lycopersicum
Solyc01g091420.1
I
0.737
GRMZM2G076327
Zea mays
GRMZM2G076327
I
0.737
LPERR08G20530
Leersia perrieri
LPERR08G20530
I
0.736
POPTR_0002s04210
Populus trichocarpa
POPTR_0002s04210
I
0.736
chr5.CM0494.160.nd
Lotus japonicus
chr5.CM0494.160.nd
I
0.736
Cagra.0698s0021
Capsella grandiflora
Cagra.0698s0021
I
0.727
Bostr.25993s0233
Boechera stricta
Bostr.25993s0233
I
0.727
Bra040311
Brassica rapa
Bra040311
I
0.727
LBD18
Arabidopsis thaliana
AT2G45420
D
0.727
Carubv10025050m.g
Capsella rubella
Carubv10025050m.g
I
0.727
LjSGA_002536.2
Lotus japonicus
LjSGA_002536.2
I
0.727
Thhalv10001791m.g
Eutrema salsugineum
Thhalv10001791m.g
I
0.727
Bra004910
Brassica rapa
Bra004910
I
0.727
Solyc01g091400.2
Solanum lycopersicum
Solyc01g091400.2
I
0.727
LBD18
Arabidopsis lyrata
fgenesh2_kg.4__2737__AT2G45420.1
I
0.727
Bo4g195520
Brassica oleracea
Bo4g195520
I
0.727
Bo4g024620
Brassica oleracea
Bo4g024620
I
0.727
Si019578m.g
Setaria italica
Si019578m.g
I
0.725
Si015156m.g
Setaria italica
Si015156m.g
I
0.725
Carubv10015417m.g
Capsella rubella
Carubv10015417m.g
I
0.725
Carubv10025548m.g
Capsella rubella
Carubv10025548m.g
I
0.725
OS02G0820500
Oryza sativa
OS02G0820500
I
0.725
ORGLA02G0327800
Oryza glaberrima
ORGLA02G0327800
I
0.725
ONIVA02G40360
Oryza nivara
ONIVA02G40360
I
0.725
LBD20
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3000301
I
0.725
LBD20
Arabidopsis thaliana
AT3G03760
I
0.725
ORUFI02G39110
Oryza rufipogon
ORUFI02G39110
I
0.725
Cagra.2636s0029
Capsella grandiflora
Cagra.2636s0029
I
0.725
Pavir.J03376
Panicum virgatum
Pavir.J03376
I
0.725
Bostr.19046s0098
Boechera stricta
Bostr.19046s0098
I
0.725
BGIOSGA005344
Oryza indica
BGIOSGA005344
I
0.725
Bra016877
Brassica rapa
Bra016877
I
0.725
Gorai.004G219900
Gossypium raimondii
Gorai.004G219900
I
0.725
OMERI02G35350
Oryza meridionalis
OMERI02G35350
I
0.725
gw1.261.12.1
Physcomitrella patens
gw1.261.12.1
I
0.725
PGSC0003DMG400022454
Solanum tuberosum
PGSC0003DMG400022454
I
0.725
LBD16
Arabidopsis thaliana
AT2G42430
D
0.725
OGLUM02G38740
Oryza glumaepatula
OGLUM02G38740
I
0.725
Cagra.2098s0013
Capsella grandiflora
Cagra.2098s0013
I
0.725
PK23185.1
Cannabis sativa
PK23185.1
I
0.725
SELMODRAFT_49270
Selaginella moellendorffii
SELMODRAFT_49270
I
0.724
SELMODRAFT_59642
Selaginella moellendorffii
SELMODRAFT_59642
I
0.724
MLOC_52276
Hordeum vulgare
MLOC_52276
I
0.721
Bra037322
Brassica rapa
Bra037322
I
0.717
Al_scaffold_0004_3226
Arabidopsis lyrata
Al_scaffold_0004_3226
I
0.717
Bo9g002150
Brassica oleracea
Bo9g002150
I
0.717
chr1.CM1255.40.nc
Lotus japonicus
chr1.CM1255.40.nc
I
0.717
GLYMA09G40500
Glycine max
GLYMA09G40500
I
0.717
PDK_20s1428661g002
Phoenix dactylifera
PDK_20s1428661g002
I
0.714
Solyc01g098220.1
Solanum lycopersicum
Solyc01g098220.1
I
0.714
Pm028642
Prunus mume
Pm028642
I
0.714
Traes_4DS_11C3B0459
Triticum aestivum
Traes_4DS_11C3B0459
I
0.714
LBD16
Vitis vinifera
VIT_07s0005g03030
I
0.714
F775_04528
Aegilops tauschii
F775_04528
I
0.714
gw1.61.81.1
Physcomitrella patens
gw1.61.81.1
I
0.714
F775_22967
Aegilops tauschii
F775_22967
I
0.714
PRUPE_ppa024802mg
Prunus persica
PRUPE_ppa024802mg
I
0.714
Aquca_017_00683
Aquilegia coerulea
Aquca_017_00683
I
0.714
PGSC0003DMG400012757
Solanum tuberosum
PGSC0003DMG400012757
I
0.712
MLOC_61947
Hordeum vulgare
MLOC_61947
I
0.711
Bo3g036000
Brassica oleracea
Bo3g036000
I
0.710
MTR_8g036085
Medicago truncatula
MTR_8g036085
I
0.707
Bo9g002160
Brassica oleracea
Bo9g002160
I
0.707
Cagra.1261s0014
Capsella grandiflora
Cagra.1261s0014
I
0.707
Carubv10001875m.g
Capsella rubella
Carubv10001875m.g
I
0.707
Ca_20428
Cicer arietinum
Ca_20428
I
0.707
LBD30
Arabidopsis lyrata
fgenesh2_kg.6__3680__AT4G00220.1
I
0.707
Bra037323
Brassica rapa
Bra037323
I
0.707
BRADI1G75110
Brachypodium distachyon
BRADI1G75110
I
0.703
Traes_4BL_A4D0F4AD6
Triticum aestivum
Traes_4BL_A4D0F4AD6
I
0.703
TRIUR3_01477
Triticum urartu
TRIUR3_01477
I
0.703
cassava25975.m1
Manihot esculenta
cassava25975.m1
I
0.703
Traes_6AL_D6045E37C
Triticum aestivum
Traes_6AL_D6045E37C
I
0.703
Traes_4DL_43D63ABE3
Triticum aestivum
Traes_4DL_43D63ABE3
I
0.703
MLOC_10784
Hordeum vulgare
MLOC_10784
I
0.703
Lus10014757.g
Linum usitatissimum
Lus10014757.g
I
0.703
PK23380.1
Cannabis sativa
PK23380.1
I
0.701