chr5.CM0494.160.nd (Lotus japonicus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 chr5.CM0494.160.nd T247431_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.856 0.856
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.856 0.856
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.856 0.856
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.778 0.778
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.778 0.778
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.722 0.722
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.722 0.722
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr5.CM0494.160.nd LOB 14 104

Links

Other LOB family TFs
Other Lotus japonicus TFs

181 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.878
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.878
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.878
Bra016877 Brassica rapa Bra016877 I 0.856
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.856
LBD16 Arabidopsis thaliana AT2G42430 D 0.856
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.856
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.844
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.844
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.844
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.844
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.833
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.822
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.811
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.811
TCM_004106 Theobroma cacao TCM_004106 I 0.808
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.808
Ca_12213 Cicer arietinum Ca_12213 I 0.808
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.798
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.798
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.798
Bo3g036000 Brassica oleracea Bo3g036000 I 0.796
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.789
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I 0.789
OB03G20590 Oryza brachyantha OB03G20590 I 0.789
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.789
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.789
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.789
MDP0000145761 Malus domestica MDP0000145761 I 0.788
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.788
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.788
Pm020629 Prunus mume Pm020629 I 0.788
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.788
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.788
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.788
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.788
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.788
MDP0000254224 Malus domestica MDP0000254224 I 0.783
POPTR_0047s00280 Populus trichocarpa POPTR_0047s00280 I 0.782
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.778
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.778
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.778
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.778
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.778
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.778
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.778
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.778
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.778
29883.m002035 Ricinus communis 29883.m002035 I 0.778
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.778
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.778
Bra004693 Brassica rapa Bra004693 I 0.778
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.778
Bo4g016000 Brassica oleracea Bo4g016000 I 0.778
Bo4g191530 Brassica oleracea Bo4g191530 I 0.778
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.770
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.768
MDP0000131964 Malus domestica MDP0000131964 I 0.768
Si019578m.g Setaria italica Si019578m.g I 0.767
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.767
OS02G0820500 Oryza sativa OS02G0820500 I 0.767
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.767
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.767
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.767
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.767
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.767
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.767
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.767
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.767
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.766
Bra001087 Brassica rapa Bra001087 I 0.765
PK23380.1 Cannabis sativa PK23380.1 I 0.761
TCM_005496 Theobroma cacao TCM_005496 I 0.761
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.759
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.758
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.758
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.758
Cla006088 Citrullus lanatus Cla006088 I 0.758
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.758
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.756
Pm028642 Prunus mume Pm028642 I 0.756
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.756
OB10G12360 Oryza brachyantha OB10G12360 I 0.756
Cla021625 Citrullus lanatus Cla021625 I 0.756
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.755
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.753
Bo3g036030 Brassica oleracea Bo3g036030 I 0.747
Bra000257 Brassica rapa Bra000257 I 0.747
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.744
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.744
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.744
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.744
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.744
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.744
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.744
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.744
PGSC0003DMG400020069 Solanum tuberosum PGSC0003DMG400020069 I 0.744
LBD20 Arabidopsis thaliana AT3G03760 I 0.744
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.744
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.744
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.744
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.744
MDP0000429067 Malus domestica MDP0000429067 I 0.744
mgf020773m Mimulus guttatus mgf020773m I 0.744
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.739
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.736
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.733
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.733
Bo8g092560 Brassica oleracea Bo8g092560 I 0.733
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.733
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.733
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.733
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.733
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.727
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.727
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.727
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.727
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.727
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.727
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.727
OS03G0246900 Oryza sativa OS03G0246900 I 0.727
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.727
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.727
OBART03G10450 Oryza barthii OBART03G10450 I 0.727
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.727
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.727
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.727
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.727
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.727
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.727
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.727
mgf026090m Mimulus guttatus mgf026090m I 0.726
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.724
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.724
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.722
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.722
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.722
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.722
PK25573.1 Cannabis sativa PK25573.1 I 0.722
Bra040312 Brassica rapa Bra040312 I 0.722
LBD30 Arabidopsis thaliana AT4G00220 D 0.722
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.722
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.721
Bo4g195510 Brassica oleracea Bo4g195510 I 0.719
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.717
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.717
PK21617.1 Cannabis sativa PK21617.1 I 0.717
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.717
Lus10000707.g Linum usitatissimum Lus10000707.g I 0.717
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.717
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.717
30174.m008898 Ricinus communis 30174.m008898 I 0.717
Cla007068 Citrullus lanatus Cla007068 I 0.717
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.717
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.717
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.717
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.717
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.717
Pm017936 Prunus mume Pm017936 I 0.717
Si015156m.g Setaria italica Si015156m.g I 0.711
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.711
F775_22967 Aegilops tauschii F775_22967 I 0.711
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.711
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.711
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.711
Ca_20429 Cicer arietinum Ca_20429 I 0.708
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.707
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.707
Bra004910 Brassica rapa Bra004910 I 0.707
Bra040311 Brassica rapa Bra040311 I 0.707
LBD18 Arabidopsis thaliana AT2G45420 D 0.707
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.707
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.707
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.707
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.707
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.707
Bo4g024620 Brassica oleracea Bo4g024620 I 0.707
MTR_1g070220 Medicago truncatula MTR_1g070220 I 0.707
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.707
TCM_004103 Theobroma cacao TCM_004103 I 0.705
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.700