CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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chr5.CM0494.160.nd
(
Lotus japonicus
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
chr5.CM0494.160.nd
T247431_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.856
0.856
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.856
0.856
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.856
0.856
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.778
0.778
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.778
0.778
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.722
0.722
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.722
0.722
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
chr5.CM0494.160.nd
LOB
14
104
PCGACKFLRRKCASDCIFAPYFCSEQGQANFAAIHKVFGASNVSKMLLHIPARDRCEAVFTIAYEAQARVRDPVYGCVSHIFALQQQVNLI
Links
Other
LOB
family TFs
Other
Lotus japonicus
TFs
181 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.001G251600
Gossypium raimondii
Gorai.001G251600
I
0.878
Gorai.007G144400
Gossypium raimondii
Gorai.007G144400
I
0.878
LjT35F15.70.nd
Lotus japonicus
LjT35F15.70.nd
I
0.878
Bra016877
Brassica rapa
Bra016877
I
0.856
Cagra.2636s0029
Capsella grandiflora
Cagra.2636s0029
I
0.856
LBD16
Arabidopsis thaliana
AT2G42430
D
0.856
Carubv10025548m.g
Capsella rubella
Carubv10025548m.g
I
0.856
PDK_20s1428661g002
Phoenix dactylifera
PDK_20s1428661g002
I
0.844
POPTR_0002s04210
Populus trichocarpa
POPTR_0002s04210
I
0.844
LBD16
Vitis vinifera
VIT_07s0005g03030
I
0.844
Aquca_017_00683
Aquilegia coerulea
Aquca_017_00683
I
0.844
Solyc09g066260.2
Solanum lycopersicum
Solyc09g066260.2
I
0.833
Lus10033872.g
Linum usitatissimum
Lus10033872.g
I
0.822
Eucgr.K03284
Eucalyptus grandis
Eucgr.K03284
I
0.811
OLONG_001985
Oryza longistaminata
OLONG_001985
I
0.811
TCM_004106
Theobroma cacao
TCM_004106
I
0.808
GLYMA19G34590
Glycine max
GLYMA19G34590
I
0.808
Ca_12213
Cicer arietinum
Ca_12213
I
0.808
evm.TU.supercontig_50.43
Carica papaya
evm.TU.supercontig_50.43
I
0.798
MTR_7g096530
Medicago truncatula
MTR_7g096530
I
0.798
GLYMA03G31830
Glycine max
GLYMA03G31830
I
0.798
Bo3g036000
Brassica oleracea
Bo3g036000
I
0.796
AMTR_s00041p00044170
Amborella trichopoda
AMTR_s00041p00044170
I
0.789
GSMUA_Achr3G27340_001
Musa acuminata
GSMUA_Achr3G27340_001
I
0.789
OB03G20590
Oryza brachyantha
OB03G20590
I
0.789
Gorai.004G219900
Gossypium raimondii
Gorai.004G219900
I
0.789
POPTR_0002s14990
Populus trichocarpa
POPTR_0002s14990
I
0.789
GSMUA_Achr1G01350_001
Musa acuminata
GSMUA_Achr1G01350_001
I
0.789
MDP0000145761
Malus domestica
MDP0000145761
I
0.788
gene08250-v1.0-hybrid
Fragaria vesca
gene08250-v1.0-hybrid
I
0.788
Gorai.004G073400
Gossypium raimondii
Gorai.004G073400
I
0.788
Pm020629
Prunus mume
Pm020629
I
0.788
PRUPE_ppa025349mg
Prunus persica
PRUPE_ppa025349mg
I
0.788
cassava15612.m1
Manihot esculenta
cassava15612.m1
I
0.788
orange1.1g040761m.g
Citrus sinensis
orange1.1g040761m.g
I
0.788
Ciclev10024416m.g
Citrus clementina
Ciclev10024416m.g
I
0.788
Aquca_034_00401
Aquilegia coerulea
Aquca_034_00401
I
0.788
MDP0000254224
Malus domestica
MDP0000254224
I
0.783
POPTR_0047s00280
Populus trichocarpa
POPTR_0047s00280
I
0.782
BRADI3G22510
Brachypodium distachyon
BRADI3G22510
I
0.778
POPTR_0014s06590
Populus trichocarpa
POPTR_0014s06590
I
0.778
SapurV1A.0006s0980
Salix purpurea
SapurV1A.0006s0980
I
0.778
SapurV1A.0378s0180
Salix purpurea
SapurV1A.0378s0180
I
0.778
Bostr.25993s0538
Boechera stricta
Bostr.25993s0538
I
0.778
SapurV1A.0532s0190
Salix purpurea
SapurV1A.0532s0190
I
0.778
POPTR_0005s24320
Populus trichocarpa
POPTR_0005s24320
I
0.778
evm.TU.supercontig_18.118
Carica papaya
evm.TU.supercontig_18.118
I
0.778
Thhalv10017158m.g
Eutrema salsugineum
Thhalv10017158m.g
I
0.778
29883.m002035
Ricinus communis
29883.m002035
I
0.778
GSMUA_Achr5G13230_001
Musa acuminata
GSMUA_Achr5G13230_001
I
0.778
LBD16
Arabidopsis lyrata
scaffold_403099.1
I
0.778
Bra004693
Brassica rapa
Bra004693
I
0.778
GSMUA_AchrUn_randomG10470_001
Musa acuminata
GSMUA_AchrUn_randomG10470_001
I
0.778
Bo4g016000
Brassica oleracea
Bo4g016000
I
0.778
Bo4g191530
Brassica oleracea
Bo4g191530
I
0.778
gw1.42.84.1
Physcomitrella patens
gw1.42.84.1
I
0.770
Lus10024877.g
Linum usitatissimum
Lus10024877.g
I
0.768
MDP0000131964
Malus domestica
MDP0000131964
I
0.768
Si019578m.g
Setaria italica
Si019578m.g
I
0.767
ORUFI02G39110
Oryza rufipogon
ORUFI02G39110
I
0.767
OS02G0820500
Oryza sativa
OS02G0820500
I
0.767
Solyc06g083930.1
Solanum lycopersicum
Solyc06g083930.1
I
0.767
BGIOSGA005344
Oryza indica
BGIOSGA005344
I
0.767
ORGLA02G0327800
Oryza glaberrima
ORGLA02G0327800
I
0.767
OMERI02G35350
Oryza meridionalis
OMERI02G35350
I
0.767
OGLUM02G38740
Oryza glumaepatula
OGLUM02G38740
I
0.767
SapurV1A.0024s0780
Salix purpurea
SapurV1A.0024s0780
I
0.767
ONIVA02G40360
Oryza nivara
ONIVA02G40360
I
0.767
Aquca_013_00578
Aquilegia coerulea
Aquca_013_00578
I
0.767
MLOC_55239
Hordeum vulgare
MLOC_55239
I
0.766
Bra001087
Brassica rapa
Bra001087
I
0.765
PK23380.1
Cannabis sativa
PK23380.1
I
0.761
TCM_005496
Theobroma cacao
TCM_005496
I
0.761
MLOC_61947
Hordeum vulgare
MLOC_61947
I
0.759
Cucsa.053440
Cucumis sativus
Cucsa.053440
I
0.758
GLYMA13G18191
Glycine max
GLYMA13G18191
I
0.758
GLYMA10G04040
Glycine max
GLYMA10G04040
I
0.758
Cla006088
Citrullus lanatus
Cla006088
I
0.758
PGSC0003DMG400009713
Solanum tuberosum
PGSC0003DMG400009713
I
0.758
gene19355-v1.0-hybrid
Fragaria vesca
gene19355-v1.0-hybrid
I
0.756
Pm028642
Prunus mume
Pm028642
I
0.756
PRUPE_ppa024802mg
Prunus persica
PRUPE_ppa024802mg
I
0.756
OB10G12360
Oryza brachyantha
OB10G12360
I
0.756
Cla021625
Citrullus lanatus
Cla021625
I
0.756
PGSC0003DMG402012772
Solanum tuberosum
PGSC0003DMG402012772
I
0.755
SapurV1A.1704s0040
Salix purpurea
SapurV1A.1704s0040
I
0.753
Bo3g036030
Brassica oleracea
Bo3g036030
I
0.747
Bra000257
Brassica rapa
Bra000257
I
0.747
Aquca_017_00693
Aquilegia coerulea
Aquca_017_00693
I
0.744
LBD20
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3000301
I
0.744
Traes_6AL_D6045E37C
Triticum aestivum
Traes_6AL_D6045E37C
I
0.744
Cagra.2098s0013
Capsella grandiflora
Cagra.2098s0013
I
0.744
TRIUR3_01477
Triticum urartu
TRIUR3_01477
I
0.744
Bostr.19046s0098
Boechera stricta
Bostr.19046s0098
I
0.744
Carubv10015417m.g
Capsella rubella
Carubv10015417m.g
I
0.744
LPERR08G20530
Leersia perrieri
LPERR08G20530
I
0.744
PGSC0003DMG400020069
Solanum tuberosum
PGSC0003DMG400020069
I
0.744
LBD20
Arabidopsis thaliana
AT3G03760
I
0.744
GLYMA10G04050
Glycine max
GLYMA10G04050
I
0.744
gw1.261.12.1
Physcomitrella patens
gw1.261.12.1
I
0.744
GLYMA18G45320
Glycine max
GLYMA18G45320
I
0.744
Solyc01g098220.1
Solanum lycopersicum
Solyc01g098220.1
I
0.744
MDP0000429067
Malus domestica
MDP0000429067
I
0.744
mgf020773m
Mimulus guttatus
mgf020773m
I
0.744
gw1.190.59.1
Physcomitrella patens
gw1.190.59.1
I
0.739
chr3.LjT44N20.90.nd
Lotus japonicus
chr3.LjT44N20.90.nd
I
0.736
gene24461-v1.0-hybrid
Fragaria vesca
gene24461-v1.0-hybrid
I
0.733
GLYMA19G34600
Glycine max
GLYMA19G34600
I
0.733
Bo8g092560
Brassica oleracea
Bo8g092560
I
0.733
Pavir.Ia03917
Panicum virgatum
Pavir.Ia03917
I
0.733
LPERR02G31040
Leersia perrieri
LPERR02G31040
I
0.733
Traes_6DL_850266B2A
Triticum aestivum
Traes_6DL_850266B2A
I
0.733
Eucgr.B01529
Eucalyptus grandis
Eucgr.B01529
I
0.733
Pavir.J34872
Panicum virgatum
Pavir.J34872
I
0.727
Lus10014757.g
Linum usitatissimum
Lus10014757.g
I
0.727
BGIOSGA011118
Oryza indica
BGIOSGA011118
I
0.727
Traes_4DL_A2012EA68
Triticum aestivum
Traes_4DL_A2012EA68
I
0.727
ORGLA03G0100400
Oryza glaberrima
ORGLA03G0100400
I
0.727
OPUNC03G10080
Oryza punctata
OPUNC03G10080
I
0.727
ORUFI03G10670
Oryza rufipogon
ORUFI03G10670
I
0.727
OS03G0246900
Oryza sativa
OS03G0246900
I
0.727
Sb01g041130
Sorghum bicolor
Sb01g041130
I
0.727
OGLUM03G10340
Oryza glumaepatula
OGLUM03G10340
I
0.727
OBART03G10450
Oryza barthii
OBART03G10450
I
0.727
BRADI1G68170
Brachypodium distachyon
BRADI1G68170
I
0.727
GRMZM2G110913
Zea mays
GRMZM2G110913
I
0.727
GSMUA_Achr5G11330_001
Musa acuminata
GSMUA_Achr5G11330_001
I
0.727
LPERR03G09330
Leersia perrieri
LPERR03G09330
I
0.727
Traes_4AS_5971FF832
Triticum aestivum
Traes_4AS_5971FF832
I
0.727
OMERI03G09680
Oryza meridionalis
OMERI03G09680
I
0.727
cassava28659.m1
Manihot esculenta
cassava28659.m1
I
0.727
mgf026090m
Mimulus guttatus
mgf026090m
I
0.726
SELMODRAFT_49270
Selaginella moellendorffii
SELMODRAFT_49270
I
0.724
SELMODRAFT_59642
Selaginella moellendorffii
SELMODRAFT_59642
I
0.724
OLONG_028429
Oryza longistaminata
OLONG_028429
I
0.722
Cagra.1261s0013
Capsella grandiflora
Cagra.1261s0013
I
0.722
Pavir.J03376
Panicum virgatum
Pavir.J03376
I
0.722
Bostr.14547s0031
Boechera stricta
Bostr.14547s0031
I
0.722
PK25573.1
Cannabis sativa
PK25573.1
I
0.722
Bra040312
Brassica rapa
Bra040312
I
0.722
LBD30
Arabidopsis thaliana
AT4G00220
D
0.722
GSMUA_Achr4G25190_001
Musa acuminata
GSMUA_Achr4G25190_001
I
0.722
MLOC_52276
Hordeum vulgare
MLOC_52276
I
0.721
Bo4g195510
Brassica oleracea
Bo4g195510
I
0.719
orange1.1g036534m.g
Citrus sinensis
orange1.1g036534m.g
I
0.717
GRMZM2G150594
Zea mays
GRMZM2G150594
I
0.717
PK21617.1
Cannabis sativa
PK21617.1
I
0.717
cassava36912.valid.m1
Manihot esculenta
cassava36912.valid.m1
I
0.717
Lus10000707.g
Linum usitatissimum
Lus10000707.g
I
0.717
GSMUA_Achr1G02520_001
Musa acuminata
GSMUA_Achr1G02520_001
I
0.717
GSMUA_Achr2G11240_001
Musa acuminata
GSMUA_Achr2G11240_001
I
0.717
30174.m008898
Ricinus communis
30174.m008898
I
0.717
Cla007068
Citrullus lanatus
Cla007068
I
0.717
Eucgr.E01414
Eucalyptus grandis
Eucgr.E01414
I
0.717
Ciclev10021992m.g
Citrus clementina
Ciclev10021992m.g
I
0.717
Traes_4BL_3FB579782
Triticum aestivum
Traes_4BL_3FB579782
I
0.717
Cucsa.362840
Cucumis sativus
Cucsa.362840
I
0.717
PRUPE_ppa010383mg
Prunus persica
PRUPE_ppa010383mg
I
0.717
Pm017936
Prunus mume
Pm017936
I
0.717
Si015156m.g
Setaria italica
Si015156m.g
I
0.711
Thhalv10028924m.g
Eutrema salsugineum
Thhalv10028924m.g
I
0.711
F775_22967
Aegilops tauschii
F775_22967
I
0.711
Cucsa.362830
Cucumis sativus
Cucsa.362830
I
0.711
Traes_4DS_11C3B0459
Triticum aestivum
Traes_4DS_11C3B0459
I
0.711
GSMUA_Achr8G14330_001
Musa acuminata
GSMUA_Achr8G14330_001
I
0.711
Ca_20429
Cicer arietinum
Ca_20429
I
0.708
Thhalv10001791m.g
Eutrema salsugineum
Thhalv10001791m.g
I
0.707
Carubv10025050m.g
Capsella rubella
Carubv10025050m.g
I
0.707
Bra004910
Brassica rapa
Bra004910
I
0.707
Bra040311
Brassica rapa
Bra040311
I
0.707
LBD18
Arabidopsis thaliana
AT2G45420
D
0.707
Cagra.0698s0021
Capsella grandiflora
Cagra.0698s0021
I
0.707
Pavir.Ia02614
Panicum virgatum
Pavir.Ia02614
I
0.707
Gorai.004G161100
Gossypium raimondii
Gorai.004G161100
I
0.707
Gorai.008G114400
Gossypium raimondii
Gorai.008G114400
I
0.707
Bostr.25993s0233
Boechera stricta
Bostr.25993s0233
I
0.707
Bo4g024620
Brassica oleracea
Bo4g024620
I
0.707
MTR_1g070220
Medicago truncatula
MTR_1g070220
I
0.707
LBD18
Arabidopsis lyrata
fgenesh2_kg.4__2737__AT2G45420.1
I
0.707
TCM_004103
Theobroma cacao
TCM_004103
I
0.705
GSMUA_AchrUn_randomG07730_001
Musa acuminata
GSMUA_AchrUn_randomG07730_001
I
0.700