LjSGA_054888.1 (Lotus japonicus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 LjSGA_054888.1 T247445_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.705 0.705
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_054888.1 LOB 7 95

Links

Other LOB family TFs
Other Lotus japonicus TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GLYMA14G07260 Glycine max GLYMA14G07260 N 0.898
evm.TU.supercontig_1.438 Carica papaya evm.TU.supercontig_1.438 I 0.841
POPTR_0010s20800 Populus trichocarpa POPTR_0010s20800 I 0.830
gene26330-v1.0-hybrid Fragaria vesca gene26330-v1.0-hybrid N 0.818
MTR_5g080470 Medicago truncatula MTR_5g080470 N 0.808
GLYMA02G41710 Glycine max GLYMA02G41710 N 0.798
Ca_16122 Cicer arietinum Ca_16122 N 0.788
LBD33 Arabidopsis lyrata Al_scaffold_0006_527 N 0.784
Cagra.2117s0054 Capsella grandiflora Cagra.2117s0054 N 0.773
Carubv10002921m.g Capsella rubella Carubv10002921m.g N 0.773
Gorai.011G267700 Gossypium raimondii Gorai.011G267700 I 0.773
cassava15468.m1 Manihot esculenta cassava15468.m1 I 0.766
PK00972.1 Cannabis sativa PK00972.1 I 0.750
Eucgr.G02955 Eucalyptus grandis Eucgr.G02955 I 0.747
30143.m001171 Ricinus communis 30143.m001171 N 0.747
Lus10004707.g Linum usitatissimum Lus10004707.g N 0.739
Ciclev10033354m.g Citrus clementina Ciclev10033354m.g I 0.727
cassava34632.m1 Manihot esculenta cassava34632.m1 N 0.727
MDP0000133936 Malus domestica MDP0000133936 N 0.717
SapurV1A.0281s0190 Salix purpurea SapurV1A.0281s0190 I 0.717
Cla004059 Citrullus lanatus Cla004059 N 0.716
Bo8g092560 Brassica oleracea Bo8g092560 I 0.716
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.716
TCM_042730 Theobroma cacao TCM_042730 I 0.707
LBD33 Vitis vinifera VIT_13s0019g02060 N 0.707
MDP0000123797 Malus domestica MDP0000123797 N 0.707
Bra001087 Brassica rapa Bra001087 I 0.706
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.705
Si015156m.g Setaria italica Si015156m.g I 0.705
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.705
mgf020773m Mimulus guttatus mgf020773m I 0.705