LjSGA_079580.1.1 (Lotus japonicus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 LjSGA_079580.1.1 T247448_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.885 0.885
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.788 0.788
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_079580.1.1 LOB 1 52

Links

Other LOB family TFs
Other Lotus japonicus TFs

192 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.962
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.942
MDP0000121203 Malus domestica MDP0000121203 I 0.923
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.923
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.923
Pm010668 Prunus mume Pm010668 I 0.904
MDP0000284409 Malus domestica MDP0000284409 I 0.904
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.904
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.904
Pm011040 Prunus mume Pm011040 I 0.904
30169.m006340 Ricinus communis 30169.m006340 I 0.904
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.904
MDP0000268890 Malus domestica MDP0000268890 I 0.904
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.904
mgf022958m Mimulus guttatus mgf022958m I 0.904
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.904
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.904
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.885
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.885
PK11564.1 Cannabis sativa PK11564.1 I 0.885
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.885
LBD4 Arabidopsis thaliana AT1G31320 D 0.885
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.885
Bra014907 Brassica rapa Bra014907 I 0.885
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.885
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.885
AMTR_s00032p00142260 Amborella trichopoda AMTR_s00032p00142260 I 0.885
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.885
Cla013678 Citrullus lanatus Cla013678 I 0.885
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.885
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.885
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.885
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.885
Bo7g041000 Brassica oleracea Bo7g041000 I 0.885
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.885
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.885
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.885
mgf026046m Mimulus guttatus mgf026046m I 0.865
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.865
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.865
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.865
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.865
Cla009336 Citrullus lanatus Cla009336 I 0.865
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.865
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.865
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.865
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.865
PK24688.1 Cannabis sativa PK24688.1 I 0.846
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.846
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.846
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.846
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.846
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.827
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.827
orange1.1g041989m.g Citrus sinensis orange1.1g041989m.g I 0.808
Ciclev10006208m.g Citrus clementina Ciclev10006208m.g I 0.808
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.788
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.788
Si037583m.g Setaria italica Si037583m.g I 0.788
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.788
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.788
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.788
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.788
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.788
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.788
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.788
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.788
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.788
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.788
orange1.1g038565m.g Citrus sinensis orange1.1g038565m.g I 0.788
MDP0000265429 Malus domestica MDP0000265429 I 0.788
TCM_042212 Theobroma cacao TCM_042212 I 0.769
TCM_042447 Theobroma cacao TCM_042447 I 0.769
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.769
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.769
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.769
Ca_04287 Cicer arietinum Ca_04287 I 0.769
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.769
ASL5 Vitis vinifera VIT_06s0004g07200 I 0.769
Ca_08998 Cicer arietinum Ca_08998 I 0.769
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.769
Si011647m.g Setaria italica Si011647m.g I 0.769
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.769
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.769
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.769
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.769
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.769
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.769
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.769
Sb05g000550 Sorghum bicolor Sb05g000550 I 0.769
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.769
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.769
GLYMA11G29450 Glycine max GLYMA11G29450 I 0.769
Si026864m.g Setaria italica Si026864m.g I 0.769
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.769
PK09808.1 Cannabis sativa PK09808.1 I 0.769
GLYMA18G02780 Glycine max GLYMA18G02780 I 0.769
LBD3 Arabidopsis thaliana AT1G16530 I 0.750
OB03G35930 Oryza brachyantha OB03G35930 N 0.750
mgf018189m Mimulus guttatus mgf018189m I 0.750
e_gw1.192.35.1 Physcomitrella patens e_gw1.192.35.1 I 0.750
OBART05G12620 Oryza barthii OBART05G12620 I 0.750
LBD12 Arabidopsis thaliana AT2G30130 I 0.750
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.750
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.750
PDK_20s1810211g001 Phoenix dactylifera PDK_20s1810211g001 I 0.750
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.750
PDK_20s1595351g001 Phoenix dactylifera PDK_20s1595351g001 N 0.750
Bostr.7128s0261 Boechera stricta Bostr.7128s0261 I 0.750
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.750
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.750
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.750
Thhalv10017267m.g Eutrema salsugineum Thhalv10017267m.g I 0.750
Lus10031285.g Linum usitatissimum Lus10031285.g I 0.750
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.750
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.750
POPTR_0001s28840 Populus trichocarpa POPTR_0001s28840 I 0.750
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.750
Bo4g059700 Brassica oleracea Bo4g059700 I 0.750
Si024229m.g Setaria italica Si024229m.g I 0.750
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.750
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.750
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.750
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.750
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.750
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.750
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.750
Bra018335 Brassica rapa Bra018335 I 0.750
Thhalv10009386m.g Eutrema salsugineum Thhalv10009386m.g I 0.750
ORGLA05G0108100 Oryza glaberrima ORGLA05G0108100 I 0.750
MDP0000318244 Malus domestica MDP0000318244 I 0.731
Gorai.009G112900 Gossypium raimondii Gorai.009G112900 I 0.731
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.731
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.731
Bo5g021980 Brassica oleracea Bo5g021980 I 0.731
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.731
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.731
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I 0.731
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.731
F775_08326 Aegilops tauschii F775_08326 I 0.731
Traes_4AL_AD9C8CB77 Triticum aestivum Traes_4AL_AD9C8CB77 I 0.731
MDP0000218986 Malus domestica MDP0000218986 I 0.731
PGSC0003DMG402023851 Solanum tuberosum PGSC0003DMG402023851 I 0.731
OS03G0659700 Oryza sativa OS03G0659700 I 0.731
PDK_20s1728161g001 Phoenix dactylifera PDK_20s1728161g001 I 0.731
PDK_20s1376911g004 Phoenix dactylifera PDK_20s1376911g004 I 0.731
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.731
Bo8g105450 Brassica oleracea Bo8g105450 I 0.731
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.731
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.731
Cucsa.144430 Cucumis sativus Cucsa.144430 I 0.731
mgf015666m Mimulus guttatus mgf015666m N 0.731
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.731
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.731
Cla007354 Citrullus lanatus Cla007354 I 0.731
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.731
Ca_13388 Cicer arietinum Ca_13388 I 0.731
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.712
PDK_20s1342451g001 Phoenix dactylifera PDK_20s1342451g001 I 0.712
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.712
OPUNC05G01600 Oryza punctata OPUNC05G01600 N 0.712
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.712
ORGLA12G0001500 Oryza glaberrima ORGLA12G0001500 I 0.712
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I 0.712
PGSC0003DMG400023939 Solanum tuberosum PGSC0003DMG400023939 I 0.712
OS05G0123000 Oryza sativa OS05G0123000 I 0.712
OMERI05G01730 Oryza meridionalis OMERI05G01730 N 0.712
OGLUM12G00350 Oryza glumaepatula OGLUM12G00350 I 0.712
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.712
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.712
GSMUA_Achr3G10050_001 Musa acuminata GSMUA_Achr3G10050_001 I 0.712
GSMUA_Achr9G18030_001 Musa acuminata GSMUA_Achr9G18030_001 I 0.712
OB05G11740 Oryza brachyantha OB05G11740 I 0.712
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.712
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.712
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.712
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.712
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.712
Lus10007525.g Linum usitatissimum Lus10007525.g I 0.712
Lus10017431.g Linum usitatissimum Lus10017431.g I 0.712
MDP0000123013 Malus domestica MDP0000123013 I 0.712
BGIOSGA018905 Oryza indica BGIOSGA018905 I 0.712
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.712
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.712
Cla013598 Citrullus lanatus Cla013598 I 0.712
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.712
TCM_043081 Theobroma cacao TCM_043081 I 0.712
Pm000938 Prunus mume Pm000938 I 0.712
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.712
MDP0000151784 Malus domestica MDP0000151784 I 0.712
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.712
OLONG_023571 Oryza longistaminata OLONG_023571 I 0.702