LjT35F15.70.nd (Lotus japonicus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 LjT35F15.70.nd T247454_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.868 0.868
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.868 0.868
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.868 0.868
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.802 0.802
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.802 0.802
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.769 0.769
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.769 0.769
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjT35F15.70.nd LOB 21 112

Links

Other LOB family TFs
Other Lotus japonicus TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.923
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.912
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.890
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I 0.878
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.869
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.868
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.868
Bra016877 Brassica rapa Bra016877 I 0.868
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.868
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.868
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.857
TCM_004106 Theobroma cacao TCM_004106 I 0.848
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.848
Ca_12213 Cicer arietinum Ca_12213 I 0.848
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.838
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.838
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.828
MDP0000145761 Malus domestica MDP0000145761 I 0.828
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.828
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.828
Pm020629 Prunus mume Pm020629 I 0.828
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.828
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.824
POPTR_0047s00280 Populus trichocarpa POPTR_0047s00280 I 0.821
MDP0000131964 Malus domestica MDP0000131964 I 0.818
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.818
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.818
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.818
Bo3g036000 Brassica oleracea Bo3g036000 I 0.817
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.813
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.813
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.813
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.811
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.808
29883.m002035 Ricinus communis 29883.m002035 I 0.808
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.808
Cla006088 Citrullus lanatus Cla006088 I 0.808
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.808
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.808
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.802
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.800
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.798
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.798
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.798
LBD16 Arabidopsis thaliana AT2G42430 D 0.798
Bo4g191530 Brassica oleracea Bo4g191530 I 0.798
Bra004693 Brassica rapa Bra004693 I 0.798
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.798
Bo4g016000 Brassica oleracea Bo4g016000 I 0.798
mgf026090m Mimulus guttatus mgf026090m I 0.795
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.795
Bra001087 Brassica rapa Bra001087 I 0.794
MDP0000254224 Malus domestica MDP0000254224 I 0.793
OB03G20590 Oryza brachyantha OB03G20590 I 0.791
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.791
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.791
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.791
PK23380.1 Cannabis sativa PK23380.1 I 0.791
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.791
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.788
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.788
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.787
TCM_005496 Theobroma cacao TCM_005496 I 0.783
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.782
OS02G0820500 Oryza sativa OS02G0820500 I 0.780
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.780
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.780
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.780
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.780
Pm028642 Prunus mume Pm028642 I 0.780
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.780
Si019578m.g Setaria italica Si019578m.g I 0.780
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.780
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.780
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.780
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.778
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.777
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.775
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.769
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.769
LBD20 Arabidopsis thaliana AT3G03760 I 0.769
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.769
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.769
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.769
PGSC0003DMG400020069 Solanum tuberosum PGSC0003DMG400020069 I 0.769
OB10G12360 Oryza brachyantha OB10G12360 I 0.769
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.769
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.769
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.769
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.768
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.768
Bra000257 Brassica rapa Bra000257 I 0.768
Bo3g036030 Brassica oleracea Bo3g036030 I 0.768
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.758
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.758
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.758
Lus10000707.g Linum usitatissimum Lus10000707.g I 0.758
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.750
mgf020773m Mimulus guttatus mgf020773m I 0.747
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.747
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.747
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.747
Pm017936 Prunus mume Pm017936 I 0.747
Cla007068 Citrullus lanatus Cla007068 I 0.747
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.747
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.747
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.747
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.747
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.747
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.747
OS03G0246900 Oryza sativa OS03G0246900 I 0.737
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.737
Bra004910 Brassica rapa Bra004910 I 0.737
OBART03G10450 Oryza barthii OBART03G10450 I 0.737
MTR_1g070220 Medicago truncatula MTR_1g070220 I 0.737
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.737
30174.m008898 Ricinus communis 30174.m008898 I 0.737
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.737
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.737
Bo4g024620 Brassica oleracea Bo4g024620 I 0.737
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.737
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.737
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.737
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.737
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.737
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.737
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.737
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I 0.737
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.737
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.737
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.737
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.737
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.737
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.737
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.737
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.737
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.737
Bra040311 Brassica rapa Bra040311 I 0.737
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.737
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.737
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.737
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.737
LBD18 Arabidopsis thaliana AT2G45420 D 0.737
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.736
PK25573.1 Cannabis sativa PK25573.1 I 0.736
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.736
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.736
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.736
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.727
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.727
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.727
Bo4g195520 Brassica oleracea Bo4g195520 I 0.727
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.727
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.727
30072.m000955 Ricinus communis 30072.m000955 I 0.727
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.727
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.727
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.727
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.727
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.725
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.725
Bo8g092560 Brassica oleracea Bo8g092560 I 0.725
Si015156m.g Setaria italica Si015156m.g I 0.725
Cla021625 Citrullus lanatus Cla021625 I 0.725
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.725
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.721
OLONG_020841 Oryza longistaminata OLONG_020841 I 0.719
OGLUM03G03710 Oryza glumaepatula OGLUM03G03710 I 0.719
MDP0000322059 Malus domestica MDP0000322059 I 0.717
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.717
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.717
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.717
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.717
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.717
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.717
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.717
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.717
mgf006429m Mimulus guttatus mgf006429m I 0.717
OB02G44330 Oryza brachyantha OB02G44330 I 0.717
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.717
PK21617.1 Cannabis sativa PK21617.1 I 0.717
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.717
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.717
F775_22967 Aegilops tauschii F775_22967 I 0.714
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.714
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.714
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.714
Ca_20429 Cicer arietinum Ca_20429 I 0.708
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.707
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.707
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.707
LBD30 Arabidopsis thaliana AT4G00220 D 0.707
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.707
Bra037323 Brassica rapa Bra037323 I 0.707
Bo9g002160 Brassica oleracea Bo9g002160 I 0.707
Bo1g153580 Brassica oleracea Bo1g153580 I 0.707
Bra036436 Brassica rapa Bra036436 I 0.707
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.707
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.707
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.707
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.707
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.707
TCM_025849 Theobroma cacao TCM_025849 I 0.707
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.707
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.707
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.707
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.707
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.707
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.707
TCM_004103 Theobroma cacao TCM_004103 I 0.705
PK23185.1 Cannabis sativa PK23185.1 I 0.703
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.703
OBART03G03820 Oryza barthii OBART03G03820 I 0.700
ONIVA03G03570 Oryza nivara ONIVA03G03570 I 0.700
ORUFI03G03540 Oryza rufipogon ORUFI03G03540 I 0.700
OGLUM03G03700 Oryza glumaepatula OGLUM03G03700 I 0.700