CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PDK_20s1387061g002
(
Phoenix dactylifera
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
PDK_20s1387061g002
T247459_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.789
0.789
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.789
0.789
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PDK_20s1387061g002
LOB
66
160
PCAACKLLRRRCAHECPFSPYFPPHDPQKFASVHKVFGASNVSKMLMEVPESRRADAANSLVYEANVRLRDPVYGCMGAISELQQQVLSIKGEET
Links
Other
LOB
family TFs
Other
Phoenix dactylifera
TFs
148 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PK21617.1
Cannabis sativa
PK21617.1
I
0.891
chr1.CM0125.30.nd
Lotus japonicus
chr1.CM0125.30.nd
I
0.874
evm.TU.supercontig_19.92
Carica papaya
evm.TU.supercontig_19.92
I
0.863
PGSC0003DMG400029080
Solanum tuberosum
PGSC0003DMG400029080
I
0.863
Gorai.013G005900
Gossypium raimondii
Gorai.013G005900
I
0.863
Solyc06g050430.2
Solanum lycopersicum
Solyc06g050430.2
I
0.863
OB05G14280
Oryza brachyantha
OB05G14280
I
0.862
MDP0000167580
Malus domestica
MDP0000167580
I
0.860
PK05388.1
Cannabis sativa
PK05388.1
I
0.857
Bra004572
Brassica rapa
Bra004572
I
0.853
chr2.CM1032.110.nc
Lotus japonicus
chr2.CM1032.110.nc
I
0.853
PRUPE_ppa011757mg
Prunus persica
PRUPE_ppa011757mg
I
0.848
LBD15
Vitis vinifera
VIT_13s0067g02380
I
0.848
Gorai.009G295000
Gossypium raimondii
Gorai.009G295000
I
0.848
gene21311-v1.0-hybrid
Fragaria vesca
gene21311-v1.0-hybrid
I
0.848
cassava15554.m1
Manihot esculenta
cassava15554.m1
I
0.848
TCM_045438
Theobroma cacao
TCM_045438
I
0.848
Bra000188
Brassica rapa
Bra000188
I
0.838
Cagra.1642s0010
Capsella grandiflora
Cagra.1642s0010
I
0.838
Carubv10024002m.g
Capsella rubella
Carubv10024002m.g
I
0.838
cassava20848.m1
Manihot esculenta
cassava20848.m1
I
0.838
Bostr.23794s0013
Boechera stricta
Bostr.23794s0013
I
0.838
Eucgr.G03121
Eucalyptus grandis
Eucgr.G03121
I
0.838
Gorai.012G015900
Gossypium raimondii
Gorai.012G015900
I
0.838
GLYMA06G15050
Glycine max
GLYMA06G15050
I
0.838
LBD15
Arabidopsis lyrata
fgenesh2_kg.4__2164__AT2G40470.1
I
0.838
LBD15
Arabidopsis thaliana
AT2G40470
I
0.838
GLYMA04G39830
Glycine max
GLYMA04G39830
I
0.838
Bo3g034980
Brassica oleracea
Bo3g034980
I
0.838
TRIUR3_18328
Triticum urartu
TRIUR3_18328
I
0.836
GSMUA_Achr11G08330_001
Musa acuminata
GSMUA_Achr11G08330_001
I
0.832
evm.TU.supercontig_331.6
Carica papaya
evm.TU.supercontig_331.6
I
0.830
MTR_3g094690
Medicago truncatula
MTR_3g094690
I
0.828
MTR_5g083960
Medicago truncatula
MTR_5g083960
I
0.828
Aquca_005_00169
Aquilegia coerulea
Aquca_005_00169
I
0.828
POPTR_0013s08040
Populus trichocarpa
POPTR_0013s08040
I
0.828
29729.m002335
Ricinus communis
29729.m002335
I
0.828
AMTR_s00007p00227160
Amborella trichopoda
AMTR_s00007p00227160
I
0.828
PK17217.1
Cannabis sativa
PK17217.1
I
0.828
Thhalv10017905m.g
Eutrema salsugineum
Thhalv10017905m.g
I
0.828
29957.m001411
Ricinus communis
29957.m001411
I
0.821
MTR_5g075020
Medicago truncatula
MTR_5g075020
I
0.821
Ciclev10032684m.g
Citrus clementina
Ciclev10032684m.g
I
0.818
orange1.1g027307m.g
Citrus sinensis
orange1.1g027307m.g
I
0.818
Ca_12420
Cicer arietinum
Ca_12420
I
0.818
Bo4g012620
Brassica oleracea
Bo4g012620
I
0.818
Ca_04126
Cicer arietinum
Ca_04126
I
0.818
MDP0000278334
Malus domestica
MDP0000278334
I
0.818
Bo4g190210
Brassica oleracea
Bo4g190210
I
0.818
Solyc06g007390.2
Solanum lycopersicum
Solyc06g007390.2
I
0.808
Bra016992
Brassica rapa
Bra016992
I
0.808
GLYMA14G38280
Glycine max
GLYMA14G38280
I
0.808
ORUFI05G04770
Oryza rufipogon
ORUFI05G04770
I
0.800
OS05G0165450
Oryza sativa
OS05G0165450
I
0.800
ONIVA05G04920
Oryza nivara
ONIVA05G04920
I
0.800
OBART05G04570
Oryza barthii
OBART05G04570
I
0.800
BGIOSGA018747
Oryza indica
BGIOSGA018747
I
0.800
OMERI05G04500
Oryza meridionalis
OMERI05G04500
I
0.800
OGLUM05G04450
Oryza glumaepatula
OGLUM05G04450
I
0.800
ORGLA05G0042200
Oryza glaberrima
ORGLA05G0042200
I
0.800
TCM_042262
Theobroma cacao
TCM_042262
I
0.798
cassava31953.m1
Manihot esculenta
cassava31953.m1
I
0.798
GSMUA_AchrUn_randomG14060_001
Musa acuminata
GSMUA_AchrUn_randomG14060_001
I
0.798
GLYMA02G40080
Glycine max
GLYMA02G40080
I
0.798
Lus10024183.g
Linum usitatissimum
Lus10024183.g
I
0.798
Traes_1AS_43FB6A3CF
Triticum aestivum
Traes_1AS_43FB6A3CF
I
0.789
Traes_1BS_8F922CA93
Triticum aestivum
Traes_1BS_8F922CA93
I
0.789
Traes_1DS_BB8508CC6
Triticum aestivum
Traes_1DS_BB8508CC6
I
0.789
MLOC_56075
Hordeum vulgare
MLOC_56075
I
0.789
F775_52636
Aegilops tauschii
F775_52636
I
0.789
Cla007391
Citrullus lanatus
Cla007391
I
0.788
GSMUA_Achr5G07460_001
Musa acuminata
GSMUA_Achr5G07460_001
I
0.788
Cucsa.144080
Cucumis sativus
Cucsa.144080
I
0.788
Gorai.003G151800
Gossypium raimondii
Gorai.003G151800
I
0.788
PGSC0003DMG400020562
Solanum tuberosum
PGSC0003DMG400020562
I
0.788
Lus10009930.g
Linum usitatissimum
Lus10009930.g
I
0.788
Lus10034208.g
Linum usitatissimum
Lus10034208.g
I
0.779
Sb03g038410
Sorghum bicolor
Sb03g038410
I
0.779
evm.TU.supercontig_2.327
Carica papaya
evm.TU.supercontig_2.327
I
0.778
Ca_15642
Cicer arietinum
Ca_15642
I
0.778
gene28137-v1.0-hybrid
Fragaria vesca
gene28137-v1.0-hybrid
I
0.778
Ciclev10002348m.g
Citrus clementina
Ciclev10002348m.g
I
0.778
orange1.1g028221m.g
Citrus sinensis
orange1.1g028221m.g
I
0.778
mgf011471m
Mimulus guttatus
mgf011471m
I
0.778
SapurV1A.0215s0070
Salix purpurea
SapurV1A.0215s0070
I
0.778
TRIUR3_34193
Triticum urartu
TRIUR3_34193
I
0.778
POPTR_0019s14790
Populus trichocarpa
POPTR_0019s14790
I
0.778
MLOC_16076
Hordeum vulgare
MLOC_16076
I
0.778
Solyc06g082430.1
Solanum lycopersicum
Solyc06g082430.1
I
0.778
BRADI2G53690
Brachypodium distachyon
BRADI2G53690
I
0.778
F775_25790
Aegilops tauschii
F775_25790
I
0.778
GSMUA_Achr7G22200_001
Musa acuminata
GSMUA_Achr7G22200_001
I
0.768
PRUPE_ppa019397mg
Prunus persica
PRUPE_ppa019397mg
I
0.768
OLONG_007328
Oryza longistaminata
OLONG_007328
I
0.768
LPERR05G04040
Leersia perrieri
LPERR05G04040
I
0.768
PGSC0003DMG400030461
Solanum tuberosum
PGSC0003DMG400030461
I
0.768
mgf020556m
Mimulus guttatus
mgf020556m
I
0.768
Eucgr.B04019
Eucalyptus grandis
Eucgr.B04019
I
0.768
POPTR_0013s15220
Populus trichocarpa
POPTR_0013s15220
I
0.768
Pavir.Ea03276
Panicum virgatum
Pavir.Ea03276
I
0.768
Si012018m.g
Setaria italica
Si012018m.g
I
0.768
Pm000277
Prunus mume
Pm000277
I
0.768
SapurV1A.0222s0070
Salix purpurea
SapurV1A.0222s0070
I
0.768
TRAES3BF078900060CFD_g
Triticum aestivum
TRAES3BF078900060CFD_g
I
0.768
Cucsa.326100
Cucumis sativus
Cucsa.326100
I
0.768
gw1.156.75.1
Physcomitrella patens
gw1.156.75.1
I
0.768
LBD13
Arabidopsis thaliana
AT2G30340
D
0.758
OLONG_000658
Oryza longistaminata
OLONG_000658
I
0.758
OBART01G35680
Oryza barthii
OBART01G35680
I
0.758
BGIOSGA004719
Oryza indica
BGIOSGA004719
I
0.758
Lus10029061.g
Linum usitatissimum
Lus10029061.g
I
0.758
OGLUM01G39690
Oryza glumaepatula
OGLUM01G39690
I
0.758
Bo4g059520
Brassica oleracea
Bo4g059520
I
0.758
Thhalv10017073m.g
Eutrema salsugineum
Thhalv10017073m.g
I
0.758
LPERR01G30700
Leersia perrieri
LPERR01G30700
I
0.758
Bo4g172950
Brassica oleracea
Bo4g172950
I
0.758
Pavir.Eb03580
Panicum virgatum
Pavir.Eb03580
I
0.758
OB01G44400
Oryza brachyantha
OB01G44400
I
0.758
Pavir.J00291
Panicum virgatum
Pavir.J00291
I
0.758
ORUFI01G39050
Oryza rufipogon
ORUFI01G39050
I
0.758
Sb09g004940
Sorghum bicolor
Sb09g004940
I
0.758
OMERI01G32750
Oryza meridionalis
OMERI01G32750
I
0.758
gw1.9.232.1
Physcomitrella patens
gw1.9.232.1
I
0.758
Si004575m.g
Setaria italica
Si004575m.g
I
0.758
LBD13
Vitis vinifera
VIT_06s0004g07790
I
0.758
Bra018320
Brassica rapa
Bra018320
I
0.758
Cagra.0567s0001
Capsella grandiflora
Cagra.0567s0001
I
0.758
Bostr.24513s0205
Boechera stricta
Bostr.24513s0205
I
0.758
Bra021627
Brassica rapa
Bra021627
I
0.758
OPUNC01G34540
Oryza punctata
OPUNC01G34540
I
0.758
ONIVA01G40640
Oryza nivara
ONIVA01G40640
I
0.758
LBD13
Arabidopsis lyrata
fgenesh2_kg.4__1005__AT2G30340.1
I
0.758
ORGLA01G0294900
Oryza glaberrima
ORGLA01G0294900
I
0.758
OS01G0825000
Oryza sativa
OS01G0825000
I
0.758
BRADI2G34520
Brachypodium distachyon
BRADI2G34520
I
0.747
GRMZM2G092517
Zea mays
GRMZM2G092517
I
0.747
Pavir.Ca01098
Panicum virgatum
Pavir.Ca01098
I
0.747
Carubv10024870m.g
Capsella rubella
Carubv10024870m.g
I
0.747
GRMZM5G868471
Zea mays
GRMZM5G868471
I
0.747
Pm019028
Prunus mume
Pm019028
I
0.745
SELMODRAFT_26920
Selaginella moellendorffii
SELMODRAFT_26920
I
0.737
SELMODRAFT_37169
Selaginella moellendorffii
SELMODRAFT_37169
I
0.737
LjSGA_040320.1
Lotus japonicus
LjSGA_040320.1
I
0.706
PK17019.1
Cannabis sativa
PK17019.1
I
0.706
evm.TU.supercontig_2.374
Carica papaya
evm.TU.supercontig_2.374
I
0.705
Ciclev10029962m.g
Citrus clementina
Ciclev10029962m.g
I
0.705
GRMZM2G025989
Zea mays
GRMZM2G025989
I
0.702
PK18922.1
Cannabis sativa
PK18922.1
I
0.702