AMTR_s00005p00185670 (Amborella trichopoda)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 AMTR_s00005p00185670 T247837_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.959 0.730
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.955 0.703
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.955 0.541
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.955 0.541
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.955 0.541
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.950 0.541
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.947 0.649
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.947 0.649
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.947 0.649
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.941 0.676
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.937 0.716
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.932 0.689
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.928 0.473
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.924 0.703
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.915 0.500
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.852 0.446
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN06792 MADF 54 131

Links

Other MADF family TFs
Other Amborella trichopoda TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.959
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.959
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.959
Cla023054 Citrullus lanatus Cla023054 I 0.959
MDP0000164819 Malus domestica MDP0000164819 D 0.955
Pm006885 Prunus mume Pm006885 I 0.955
GT-1 Arabidopsis thaliana AT1G13450 D 0.955
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.950
GT-4 Arabidopsis thaliana AT3G25990 D 0.947
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.946
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.946
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.946
Bra026903 Brassica rapa Bra026903 I 0.946
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.945
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.945
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.943
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.941
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.938
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.937
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.937
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.937
Bra019721 Brassica rapa Bra019721 I 0.936
Bo5g017510 Brassica oleracea Bo5g017510 I 0.936
Si010147m.g Setaria italica Si010147m.g I 0.935
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.932
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.932
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.932
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.932
Ca_11315 Cicer arietinum Ca_11315 I 0.932
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.932
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.932
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.932
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.931
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.931
Si036121m.g Setaria italica Si036121m.g I 0.929
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.928
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.928
OS04G0486400 Oryza sativa OS04G0486400 D 0.928
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.925
29929.m004704 Ricinus communis 29929.m004704 D 0.924
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.923
OB04G23970 Oryza brachyantha OB04G23970 I 0.919
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.919
Bo8g107400 Brassica oleracea Bo8g107400 I 0.917
Bra036354 Brassica rapa Bra036354 I 0.916
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.916
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.916
Bo2g138840 Brassica oleracea Bo2g138840 I 0.915
PK20543.1 Cannabis sativa PK20543.1 D 0.915
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.913
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.913
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.910
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.909
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.909
TCM_010751 Theobroma cacao TCM_010751 I 0.909
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.909
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.908
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.905
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.905
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.894
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.892
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.887
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.887
Pm016214 Prunus mume Pm016214 I 0.869
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.869
mgf016368m Mimulus guttatus mgf016368m I 0.866
MDP0000275412 Malus domestica MDP0000275412 I 0.864
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.852