AMTR_s00041p00147950 (Amborella trichopoda)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 AMTR_s00041p00147950 T247845_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT-GTL1
M06968_2.00
Arabidopsis thaliana
RHRGTAAAWW

WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_col_a
0.896 0.796
AT-GTL1
M06969_2.00
Arabidopsis thaliana
RHRGTAAAWW

WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_colamp_a
0.896 0.796
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN13368 MADF 81 152
ERN13368 MADF 421 491

Links

Other MADF family TFs
Other Amborella trichopoda TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29576.m000223 Ricinus communis 29576.m000223 I 0.907
30068.m002635 Ricinus communis 30068.m002635 I 0.941
30206.m000769 Ricinus communis 30206.m000769 I 0.905
AMTR_s00002p00271480 Amborella trichopoda AMTR_s00002p00271480 N 0.829
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.941
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.953
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.896
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.931
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.955
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.943
Bo2g091240 Brassica oleracea Bo2g091240 I 0.843
Bo6g049430 Brassica oleracea Bo6g049430 I 0.898
Bo6g083690 Brassica oleracea Bo6g083690 I 0.876
Bo6g120870 Brassica oleracea Bo6g120870 I 0.876
Bo8g027460 Brassica oleracea Bo8g027460 I 0.847
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.876
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.854
Bra003702 Brassica rapa Bra003702 I 0.837
Bra003703 Brassica rapa Bra003703 I 0.876
Bra008285 Brassica rapa Bra008285 I 0.864
Bra015716 Brassica rapa Bra015716 I 0.876
Bra036731 Brassica rapa Bra036731 I 0.847
Bra040010 Brassica rapa Bra040010 I 0.898
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.895
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.933
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.951
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.867
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.876
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.899
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.899
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.867
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.876
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.898
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.907
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.902
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.941
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.941
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.941
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.904
Ca_04385 Cicer arietinum Ca_04385 I 0.864
Ca_04386 Cicer arietinum Ca_04386 I 0.897
Ca_25135 Cicer arietinum Ca_25135 I 0.873
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.887
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.914
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.945
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.889
Cla001992 Citrullus lanatus Cla001992 I 0.860
Cla005046 Citrullus lanatus Cla005046 I 0.948
Cla007910 Citrullus lanatus Cla007910 I 0.872
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.946
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.860
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.865
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.910
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.893
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.955
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.930
F775_24861 Aegilops tauschii F775_24861 N 0.880
F775_26337 Aegilops tauschii F775_26337 I 0.951
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.896
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.944
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.879
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.916
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.884
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.816
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.818
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.816
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.890
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.881
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.900
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.881
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.887
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.947
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.876
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.931
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.858
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.887
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.948
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.888
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.910
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.937
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.933
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.893
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.904
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.892
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.952
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.916
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.931
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.922
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.931
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.952
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.943
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.868
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.828
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.836
MDP0000156139 Malus domestica MDP0000156139 I 0.899
MDP0000451038 Malus domestica MDP0000451038 I 0.946
MDP0000451107 Malus domestica MDP0000451107 I 0.894
MDP0000701272 Malus domestica MDP0000701272 I 0.953
mgf004276m Mimulus guttatus mgf004276m I 0.924
mgf015314m Mimulus guttatus mgf015314m N 0.831
mgf018892m Mimulus guttatus mgf018892m N 0.887
mgf021983m Mimulus guttatus mgf021983m I 0.893
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.949
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.925
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.920
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.869
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.881
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.875
OB02G33250 Oryza brachyantha OB02G33250 I 0.934
OB04G27270 Oryza brachyantha OB04G27270 I 0.957
OBART02G25970 Oryza barthii OBART02G25970 I 0.931
OBART04G20290 Oryza barthii OBART04G20290 I 0.955
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.931
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.935
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.955
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.943
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.957
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.935
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.943
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.941
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.955
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.931
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.943
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.924
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.957
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.949
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.945
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.887
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.914
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.889
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.931
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.942
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.931
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.941
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.955
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.943
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.904
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.952
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.935
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.926
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.898
PK24122.1 Cannabis sativa PK24122.1 I 0.876
PK26613.1 Cannabis sativa PK26613.1 I 0.872
Pm001889 Prunus mume Pm001889 I 0.879
Pm022570 Prunus mume Pm022570 I 0.878
Pm022572 Prunus mume Pm022572 I 0.900
Pm024289 Prunus mume Pm024289 I 0.950
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.899
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.950
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.894
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.902
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.905
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.901
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.946
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.910
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.950
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.900
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.868
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.949
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.885
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.882
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.899
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.950
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.903
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.888
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.893
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.903
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.937
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.906
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.948
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.876
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.919
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.912
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.912
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.919
Si012121m.g Setaria italica Si012121m.g I 0.952
Si016578m.g Setaria italica Si016578m.g I 0.890
Si034382m.g Setaria italica Si034382m.g I 0.944
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.898
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.919
TCM_001348 Theobroma cacao TCM_001348 I 0.890
TCM_015563 Theobroma cacao TCM_015563 I 0.947
TCM_035565 Theobroma cacao TCM_035565 I 0.895
TCM_035571 Theobroma cacao TCM_035571 I 0.883
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.904
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.876
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.940
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.944
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.951
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.940
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.889
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.952
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.862
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.916