AMTR_s00055p00209070 (Amborella trichopoda)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 AMTR_s00055p00209070 T247846_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GLYMA11G37390
M02269_2.00
Glycine max
BWDACYNNNN

NNNNRGTHWV
PBM
Weirauch et al.(2014)
pTH9183
0.951 0.721
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00
Arabidopsis lyrata
NNNHAACCCCYNN

NNRGGGGTTDNNN
PBM
Weirauch et al.(2014)
pTH9228
0.948 0.529
cassava13991.valid.m1
M02279_2.00
Manihot esculenta
NNDACHNNNN

NNNNDGTHNN
PBM
Weirauch et al.(2014)
pTH9206
0.946 0.559
PK20543.1
M01264_2.00
Cannabis sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Lambert et al.(2019)
pTH11253
0.941 0.632
GT-1
M02263_2.00
Arabidopsis thaliana
KTTAACCM

KGGTTAAM
PBM
Weirauch et al.(2014)
pTH8149
0.938 0.824
GT-1
M10896_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_02
0.938 0.824
GT-1
M10897_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6
0.938 0.824
GT-1
M02274_2.00
Arabidopsis lyrata
GGTTAACC

GGTTAACC
PBM
Weirauch et al.(2014)
pTH9235
0.937 0.676
MTR_3g085960
M02270_2.00
Medicago truncatula
NWAACYNNNN

NNNNRGTTWN
PBM
Weirauch et al.(2014)
pTH9208
0.925 0.603
29929.m004704
M02278_2.00
Ricinus communis
NDNDHDHNHN

NDNDHDHNHN
PBM
Weirauch et al.(2014)
pTH9339
0.923 0.515
OS04G0486400
M02273_2.00
Oryza sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Weirauch et al.(2014)
pTH9338
0.917 0.632
MDP0000164819
M02280_2.00
Malus domestica
YTAACYVNNN

NNNBRGTTAR
PBM
Weirauch et al.(2014)
pTH9204
0.917 0.544
GT-4
M02265_2.00
Arabidopsis thaliana
NHDACHNNNN

NNNNDGTHDN
PBM
Weirauch et al.(2014)
pTH7910
0.912 0.500
GT-4
M06974_2.00
Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH

DDWWWWRWHTTAACCATGGTT
Dap-seq
OMalley et al.(2016)
AT3G25990_col_a
0.912 0.500
GT-4
M06975_2.00
Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH

DNHTAAYYWBRGTTARNKWW
Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a
0.912 0.500
VIT_17s0000g10420
M02275_2.00
Vitis vinifera
GTTAACYV

BRGTTAAC
PBM
Weirauch et al.(2014)
pTH9293
0.874 0.471
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN18358 MADF 122 193

Links

Other MADF family TFs
Other Amborella trichopoda TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.961
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.960
TCM_010751 Theobroma cacao TCM_010751 I 0.960
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.960
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.958
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.952
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.951
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.951
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.951
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.950
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.950
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.950
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.949
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.948
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.946
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.946
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.946
Ca_11315 Cicer arietinum Ca_11315 I 0.946
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.946
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.944
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.941
PK20543.1 Cannabis sativa PK20543.1 D 0.941
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.939
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.939
GT-1 Arabidopsis thaliana AT1G13450 D 0.938
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.938
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.938
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.937
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.935
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.932
Bra026903 Brassica rapa Bra026903 I 0.931
Bo8g107400 Brassica oleracea Bo8g107400 I 0.931
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.931
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.931
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.931
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.931
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.929
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.926
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.925
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.925
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.925
Cla023054 Citrullus lanatus Cla023054 I 0.925
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.923
29929.m004704 Ricinus communis 29929.m004704 D 0.923
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.919
Bo5g017510 Brassica oleracea Bo5g017510 I 0.919
Bra019721 Brassica rapa Bra019721 I 0.919
MDP0000164819 Malus domestica MDP0000164819 D 0.917
Pm006885 Prunus mume Pm006885 I 0.917
OS04G0486400 Oryza sativa OS04G0486400 D 0.917
Si036121m.g Setaria italica Si036121m.g I 0.917
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.917
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.917
Pm016214 Prunus mume Pm016214 I 0.917
Si010147m.g Setaria italica Si010147m.g I 0.916
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.916
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.916
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.916
MDP0000275412 Malus domestica MDP0000275412 I 0.914
GT-4 Arabidopsis thaliana AT3G25990 D 0.912
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.911
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.908
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.906
mgf016368m Mimulus guttatus mgf016368m I 0.904
Bo2g138840 Brassica oleracea Bo2g138840 I 0.890
Bra036354 Brassica rapa Bra036354 I 0.890
OB04G23970 Oryza brachyantha OB04G23970 I 0.888
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.874