GT-1 (Arabidopsis thaliana)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 AT1G13450 T247876_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes GT-1, a plant transcription factor that binds to one of the cis-acting elements, BoxII, which resides within the upstream promoter region of light-responsive genes. GT-1 was assumed to act as a molecular switch modulated through Ca(2+)-dependent phosphorylation/dephosphorylation in response to light signals.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GT-1
M02263_2.00
Arabidopsis thaliana
KTTAACCM

KGGTTAAM
PBM
Weirauch et al.(2014)
pTH8149
(Direct) (Direct)
GT-1
M06967_2.00
Arabidopsis thaliana
HNYTAACYRTRRTTRWNHN

NDNWYAAYYAYRGTTARND
Dap-seq
OMalley et al.(2016)
GT1_col_a
(Direct) (Direct)
GT-1
M10896_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_02
(Direct) (Direct)
GT-1
M10897_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GT-1
M02274_2.00
Arabidopsis lyrata
GGTTAACC

GGTTAACC
PBM
Weirauch et al.(2014)
pTH9235
0.967 0.775
MTR_3g085960
M02270_2.00
Medicago truncatula
NWAACYNNNN

NNNNRGTTWN
PBM
Weirauch et al.(2014)
pTH9208
0.961 0.634
MDP0000164819
M02280_2.00
Malus domestica
YTAACYVNNN

NNNBRGTTAR
PBM
Weirauch et al.(2014)
pTH9204
0.958 0.786
GT-4
M02265_2.00
Arabidopsis thaliana
NHDACHNNNN

NNNNDGTHDN
PBM
Weirauch et al.(2014)
pTH7910
0.944 0.648
GT-4
M06974_2.00
Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH

DDWWWWRWHTTAACCATGGTT
Dap-seq
OMalley et al.(2016)
AT3G25990_col_a
0.949 0.535
GT-4
M06975_2.00
Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH

DNHTAAYYWBRGTTARNKWW
Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a
0.949 0.535
OS04G0486400
M02273_2.00
Oryza sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Weirauch et al.(2014)
pTH9338
0.945 0.634
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00
Arabidopsis lyrata
NNNHAACCCCYNN

NNRGGGGTTDNNN
PBM
Weirauch et al.(2014)
pTH9228
0.942 0.563
GLYMA11G37390
M02269_2.00
Glycine max
BWDACYNNNN

NNNNRGTHWV
PBM
Weirauch et al.(2014)
pTH9183
0.939 0.761
cassava13991.valid.m1
M02279_2.00
Manihot esculenta
NNDACHNNNN

NNNNDGTHNN
PBM
Weirauch et al.(2014)
pTH9206
0.935 0.757
PK20543.1
M01264_2.00
Cannabis sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Lambert et al.(2019)
pTH11253
0.920 0.648
29929.m004704
M02278_2.00
Ricinus communis
NDNDHDHNHN

NDNDHDHNHN
PBM
Weirauch et al.(2014)
pTH9339
0.917 0.718
VIT_17s0000g10420
M02275_2.00
Vitis vinifera
GTTAACYV

BRGTTAAC
PBM
Weirauch et al.(2014)
pTH9293
0.884 0.465
For this family, TFs with SR scores > 0.812 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02263_2.00 MADF 53 127

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G13450.1 MADF 97 171
AT1G13450.2 MADF 97 175
AT1G13450.3 MADF 97 171
AT1G13450.4 MADF 96 177

Links

Other MADF family TFs
Other Arabidopsis thaliana TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.968
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.968
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.968
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.967
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.966
Bra026903 Brassica rapa Bra026903 I 0.965
Bra019721 Brassica rapa Bra019721 I 0.961
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.961
Bo5g017510 Brassica oleracea Bo5g017510 I 0.961
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.961
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.960
Cla023054 Citrullus lanatus Cla023054 I 0.960
MDP0000164819 Malus domestica MDP0000164819 D 0.958
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.958
Pm006885 Prunus mume Pm006885 I 0.958
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.956
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.955
Si010147m.g Setaria italica Si010147m.g I 0.951
GT-4 Arabidopsis thaliana AT3G25990 D 0.949
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.947
Bo8g107400 Brassica oleracea Bo8g107400 I 0.947
OS04G0486400 Oryza sativa OS04G0486400 D 0.945
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.945
Si036121m.g Setaria italica Si036121m.g I 0.945
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.943
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.943
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.942
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.941
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.941
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.941
TCM_010751 Theobroma cacao TCM_010751 I 0.941
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.939
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.939
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.938
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.938
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.938
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.936
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.935
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.935
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.935
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.935
Ca_11315 Cicer arietinum Ca_11315 I 0.933
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.930
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.927
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.927
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.927
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.926
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.926
OB04G23970 Oryza brachyantha OB04G23970 I 0.926
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.926
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.923
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.923
PK20543.1 Cannabis sativa PK20543.1 D 0.921
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.920
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.918
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.917
29929.m004704 Ricinus communis 29929.m004704 D 0.917
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.913
Bra036354 Brassica rapa Bra036354 I 0.910
Bo2g138840 Brassica oleracea Bo2g138840 I 0.910
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.909
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.909
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.908
mgf016368m Mimulus guttatus mgf016368m I 0.893
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.888
Pm016214 Prunus mume Pm016214 I 0.888
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.884
MDP0000275412 Malus domestica MDP0000275412 I 0.883