AT3G10030 (Arabidopsis thaliana)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 AT3G10030 T247881_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00		 Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538		 (Direct) (Direct)
AT3G10030
M06971_2.00		 Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a		 (Direct) (Direct)
AT3G10030
M06972_2.00		 Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK04914.1
M01262_2.00 		Cannabis sativa
DCCGTYAN
NTRACGGH		 PBM
Lambert et al.(2019)
pTH10098 		0.951 0.811
For this family, TFs with SR scores > 0.812 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01258_2.00 MADF 51 132

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G10030.1 MADF 165 246
AT3G10030.2 MADF 165 246

Links

Other MADF family TFs
Other Arabidopsis thaliana TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I 0.971
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I 0.971
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I 0.967
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I 0.967
Carubv10015256m.g Capsella rubella Carubv10015256m.g I 0.967
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I 0.961
Bo5g137800 Brassica oleracea Bo5g137800 I 0.960
Bra029812 Brassica rapa Bra029812 I 0.960
Cla018015 Citrullus lanatus Cla018015 I 0.958
Cucsa.378670 Cucumis sativus Cucsa.378670 I 0.958
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I 0.957
29815.m000504 Ricinus communis 29815.m000504 I 0.957
Ca_20148 Cicer arietinum Ca_20148 I 0.954
MTR_1g061600 Medicago truncatula MTR_1g061600 I 0.954
GLYMA13G21371 Glycine max GLYMA13G21371 I 0.951
PK04914.1 Cannabis sativa PK04914.1 D 0.951
GLYMA10G07490 Glycine max GLYMA10G07490 I 0.951
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I 0.950
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I 0.950
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I 0.949
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I 0.948
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I 0.948
Pm026265 Prunus mume Pm026265 I 0.947
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I 0.947
TCM_022397 Theobroma cacao TCM_022397 I 0.939
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I 0.937
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I 0.931
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I 0.925
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I 0.925
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I 0.925
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I 0.924
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I 0.924
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I 0.922
GLYMA10G34520 Glycine max GLYMA10G34520 I 0.921
MDP0000201016 Malus domestica MDP0000201016 I 0.915
MDP0000399495 Malus domestica MDP0000399495 I 0.915
MDP0000415733 Malus domestica MDP0000415733 I 0.915
mgf008067m Mimulus guttatus mgf008067m I 0.904
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I 0.900
28077.m000081 Ricinus communis 28077.m000081 I 0.895
TCM_043551 Theobroma cacao TCM_043551 I 0.894
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I 0.885
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I 0.883
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I 0.881
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I 0.880
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I 0.880
OPUNC04G09570 Oryza punctata OPUNC04G09570 I 0.872
BGIOSGA016339 Oryza indica BGIOSGA016339 I 0.872
ONIVA04G09510 Oryza nivara ONIVA04G09510 I 0.872
OMERI04G10080 Oryza meridionalis OMERI04G10080 I 0.872
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I 0.871
OB04G18670 Oryza brachyantha OB04G18670 I 0.870
LPERR04G08300 Leersia perrieri LPERR04G08300 I 0.867
SELMODRAFT_134056 Selaginella moellendorffii SELMODRAFT_134056 I 0.863
SELMODRAFT_130409 Selaginella moellendorffii SELMODRAFT_130409 I 0.863
Sb06g015280 Sorghum bicolor Sb06g015280 I 0.862
MLOC_28975 Hordeum vulgare MLOC_28975 I 0.859
GRMZM2G002978 Zea mays GRMZM2G002978 I 0.851
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I 0.850
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I 0.850
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I 0.847
Si009787m.g Setaria italica Si009787m.g I 0.847
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I 0.847
F775_31501 Aegilops tauschii F775_31501 I 0.847
TRIUR3_22240 Triticum urartu TRIUR3_22240 I 0.847
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I 0.847
GLYMA20G33031 Glycine max GLYMA20G33031 I 0.839
Pavir.J13370 Panicum virgatum Pavir.J13370 I 0.839