AT3G10030 (Arabidopsis thaliana)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 AT3G10030 T247881_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G10030
M01258_2.00
Arabidopsis thaliana
NRMCGTTAWNN

NNWTAACGKYN
PBM
Lambert et al.(2019)
pTH11538
(Direct) (Direct)
AT3G10030
M06971_2.00
Arabidopsis thaliana
HRHCKCCGTTANND

HNNTAACGGMGDYD
Dap-seq
OMalley et al.(2016)
AT3G10030_col_a
(Direct) (Direct)
AT3G10030
M06972_2.00
Arabidopsis thaliana
HWRHMKCCGTTAAHD

HDTTAACGGMKDYWD
Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK04914.1
M01262_2.00
Cannabis sativa
DCCGTYAN

NTRACGGH
PBM
Lambert et al.(2019)
pTH10098
0.951 0.811
For this family, TFs with SR scores > 0.812 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01258_2.00 MADF 51 132

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G10030.1 MADF 165 246
AT3G10030.2 MADF 165 246

Links

Other MADF family TFs
Other Arabidopsis thaliana TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
csin109769 Clonorchis sinensis csin109769 N 0.000
ECANG7_08792 Echinococcus canadensis ECANG7_08792 N 0.000
ECPE_0001125701 Echinostoma caproni ECPE_0001125701 N 0.000
EmuJ_000664200 Echinococcus multilocularis EmuJ_000664200 N 0.000
HDID_0000408501 Hymenolepis diminuta HDID_0000408501 N 0.000
HmN_000696200 Hymenolepis microstoma HmN_000696200 N 0.000
MCOS_0000035501 Mesocestoides corti MCOS_0000035501 N 0.000
SCUD_0002083401 Schistosoma curassoni SCUD_0002083401 N 0.000
SMRZ_0002373501 Schistosoma margrebowiei SMRZ_0002373501 N 0.000
SMTD_0000028201 Schistosoma mattheei SMTD_0000028201 N 0.000
SPER_0002737601 Spirometra erinaceieuropaei SPER_0002737601 N 0.000
T265_08377 Opisthorchis viverrini T265_08377 N 0.000
TASK_0000847801 Taenia asiatica TASK_0000847801 N 0.000
TRE_0000501301 Trichobilharzia regenti TRE_0000501301 N 0.000
TsM_001129200 Taenia solium TsM_001129200 N 0.000
TTAC_0000138601 Hydatigera taeniaeformis TTAC_0000138601 N 0.000