GT-4 (Arabidopsis thaliana)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 AT3G25990 T247886_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GT-4
M02265_2.00
Arabidopsis thaliana
NHDACHNNNN

NNNNDGTHDN
PBM
Weirauch et al.(2014)
pTH7910
(Direct) (Direct)
GT-4
M06974_2.00
Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH

DDWWWWRWHTTAACCATGGTT
Dap-seq
OMalley et al.(2016)
AT3G25990_col_a
(Direct) (Direct)
GT-4
M06975_2.00
Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH

DNHTAAYYWBRGTTARNKWW
Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MTR_3g085960
M02270_2.00
Medicago truncatula
NWAACYNNNN

NNNNRGTTWN
PBM
Weirauch et al.(2014)
pTH9208
0.958 0.676
MDP0000164819
M02280_2.00
Malus domestica
YTAACYVNNN

NNNBRGTTAR
PBM
Weirauch et al.(2014)
pTH9204
0.954 0.797
GT-1
M02263_2.00
Arabidopsis thaliana
KTTAACCM

KGGTTAAM
PBM
Weirauch et al.(2014)
pTH8149
0.949 0.514
GT-1
M10896_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_02
0.949 0.514
GT-1
M10897_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6
0.949 0.514
GT-1
M02274_2.00
Arabidopsis lyrata
GGTTAACC

GGTTAACC
PBM
Weirauch et al.(2014)
pTH9235
0.949 0.500
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00
Arabidopsis lyrata
NNNHAACCCCYNN

NNRGGGGTTDNNN
PBM
Weirauch et al.(2014)
pTH9228
0.939 0.919
GLYMA11G37390
M02269_2.00
Glycine max
BWDACYNNNN

NNNNRGTHWV
PBM
Weirauch et al.(2014)
pTH9183
0.935 0.689
cassava13991.valid.m1
M02279_2.00
Manihot esculenta
NNDACHNNNN

NNNNDGTHNN
PBM
Weirauch et al.(2014)
pTH9206
0.929 0.770
OS04G0486400
M02273_2.00
Oryza sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Weirauch et al.(2014)
pTH9338
0.924 0.500
29929.m004704
M02278_2.00
Ricinus communis
NDNDHDHNHN

NDNDHDHNHN
PBM
Weirauch et al.(2014)
pTH9339
0.919 0.757
PK20543.1
M01264_2.00
Cannabis sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Lambert et al.(2019)
pTH11253
0.899 0.541
VIT_17s0000g10420
M02275_2.00
Vitis vinifera
GTTAACYV

BRGTTAAC
PBM
Weirauch et al.(2014)
pTH9293
0.849 0.378
For this family, TFs with SR scores > 0.812 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02265_2.00 MADF 51 127

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G25990.1 MADF 63 139

Links

Other MADF family TFs
Other Arabidopsis thaliana TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.958
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.958
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.958
Cla023054 Citrullus lanatus Cla023054 I 0.958
MDP0000164819 Malus domestica MDP0000164819 D 0.954
Pm006885 Prunus mume Pm006885 I 0.954
GT-1 Arabidopsis thaliana AT1G13450 D 0.949
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.949
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.947
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.944
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.944
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.944
Bra026903 Brassica rapa Bra026903 I 0.944
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.943
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.940
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.939
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.938
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.938
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.936
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.935
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.935
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.935
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.935
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.934
Bo5g017510 Brassica oleracea Bo5g017510 I 0.933
Bra019721 Brassica rapa Bra019721 I 0.933
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.930
Ca_11315 Cicer arietinum Ca_11315 I 0.929
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.929
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.929
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.929
Si010147m.g Setaria italica Si010147m.g I 0.925
OS04G0486400 Oryza sativa OS04G0486400 D 0.924
Si036121m.g Setaria italica Si036121m.g I 0.924
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.924
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.922
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.920
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.920
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.920
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.920
29929.m004704 Ricinus communis 29929.m004704 D 0.919
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.919
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.917
Bra036354 Brassica rapa Bra036354 I 0.917
Bo2g138840 Brassica oleracea Bo2g138840 I 0.917
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.917
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.916
OB04G23970 Oryza brachyantha OB04G23970 I 0.915
Bo8g107400 Brassica oleracea Bo8g107400 I 0.915
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.914
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.913
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.912
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.908
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.907
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.906
TCM_010751 Theobroma cacao TCM_010751 I 0.906
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.906
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.906
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.906
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.903
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.903
PK20543.1 Cannabis sativa PK20543.1 D 0.899
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.887
mgf016368m Mimulus guttatus mgf016368m I 0.878
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.860
Pm016214 Prunus mume Pm016214 I 0.860
MDP0000275412 Malus domestica MDP0000275412 I 0.854
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.849