CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AT3G54390
(
Arabidopsis thaliana
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF10545 (MADF_DNA_bdg)
IPR006578
AT3G54390
T247888_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G54390.1
MADF
46
122
LLEAYESKWVLRNRAKLKGQDWEDVAKHVSSRATHTKSPKTQTQCKNKIESMKKRYRSESATADGSSWPLYPRLDHL
AT3G54390.2
MADF
62
138
LLEAYESKWVLRNRAKLKGQDWEDVAKHVSSRATHTKSPKTQTQCKNKIESMKKRYRSESATADGSSWPLYPRLDHL
Links
Other
MADF
family TFs
Other
Arabidopsis thaliana
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo8g083630
Brassica oleracea
Bo8g083630
N
0.968
Bo8g068640
Brassica oleracea
Bo8g068640
N
0.965
Pm016744
Prunus mume
Pm016744
N
0.964
Cagra.0562s0030
Capsella grandiflora
Cagra.0562s0030
N
0.962
Carubv10019255m.g
Capsella rubella
Carubv10019255m.g
N
0.962
fgenesh2_kg.5__1832__AT3G54390.1
Arabidopsis lyrata
fgenesh2_kg.5__1832__AT3G54390.1
N
0.960
Bostr.0697s0050
Boechera stricta
Bostr.0697s0050
N
0.960
Bra007069
Brassica rapa
Bra007069
N
0.957
Solyc01g096470.2
Solanum lycopersicum
Solyc01g096470.2
N
0.956
LjSGA_030847.2
Lotus japonicus
LjSGA_030847.2
N
0.956
SapurV1A.0574s0200
Salix purpurea
SapurV1A.0574s0200
N
0.952
POPTR_0001s06580
Populus trichocarpa
POPTR_0001s06580
N
0.952
PRUPE_ppa007968mg
Prunus persica
PRUPE_ppa007968mg
N
0.952
SapurV1A.0009s1160
Salix purpurea
SapurV1A.0009s1160
N
0.951
POPTR_0003s19470
Populus trichocarpa
POPTR_0003s19470
N
0.951
GLYMA11G25570
Glycine max
GLYMA11G25570
N
0.951
cassava22232.valid.m1
Manihot esculenta
cassava22232.valid.m1
N
0.947
GLYMA13G26550
Glycine max
GLYMA13G26550
N
0.941
VIT_13s0084g00800
Vitis vinifera
VIT_13s0084g00800
N
0.935
Cla010096
Citrullus lanatus
Cla010096
N
0.925
Aquca_004_00804
Aquilegia coerulea
Aquca_004_00804
N
0.918
MDP0000727700
Malus domestica
MDP0000727700
N
0.918
MDP0000123719
Malus domestica
MDP0000123719
N
0.918
Ciclev10001759m.g
Citrus clementina
Ciclev10001759m.g
N
0.885
GLYMA15G37451
Glycine max
GLYMA15G37451
N
0.881