AT5G47660 (Arabidopsis thaliana)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 AT5G47660 T247891_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes ATMPK1.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G47660
M02266_2.00		 Arabidopsis thaliana
RCGGTAAW
WTTACCGY		 PBM
Weirauch et al.(2014)
pTH7911		 (Direct) (Direct)
AT5G47660
M06980_2.00		 Arabidopsis thaliana
RCRGTWAAAAHDDHW
WDHHDTTTTWACYGY		 Dap-seq
OMalley et al.(2016)
AT5G47660_col_a		 (Direct) (Direct)
AT5G47660
M06981_2.00		 Arabidopsis thaliana
WHHHHRCRGTWAAWW
WWTTWACYGYDDDDW		 Dap-seq
OMalley et al.(2016)
AT5G47660_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.812 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02266_2.00 MADF 56 127

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G47660.1 MADF 315 386

Links

Other MADF family TFs
Other Arabidopsis thaliana TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.14419s0059 Boechera stricta Bostr.14419s0059 I 0.963
Al_scaffold_0008_21 Arabidopsis lyrata Al_scaffold_0008_21 I 0.962
Carubv10027995m.g Capsella rubella Carubv10027995m.g I 0.944
Cagra.15822s0012 Capsella grandiflora Cagra.15822s0012 I 0.944
Thhalv10000907m.g Eutrema salsugineum Thhalv10000907m.g I 0.911
Bo2g133550 Brassica oleracea Bo2g133550 I 0.903
Bra022149 Brassica rapa Bra022149 I 0.893
Bo7g077820 Brassica oleracea Bo7g077820 I 0.838
MTR_2g026725 Medicago truncatula MTR_2g026725 I 0.821