Bo1g134590 (Brassica oleracea)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bo1g134590 T247973_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.884 0.768
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g134590.1 MADF 75 150

Links

Other MADF family TFs
Other Brassica oleracea TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra021536 Brassica rapa Bra021536 I 0.902
ASIL2 Arabidopsis thaliana AT3G14180 D 0.884
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.884
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.884
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.884
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.884
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.884
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.863
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.863
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.863
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.863
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.863
Cla015773 Citrullus lanatus Cla015773 I 0.863
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.863
Bra021534 Brassica rapa Bra021534 I 0.862
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.854
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.849
Bo3g065930 Brassica oleracea Bo3g065930 I 0.847
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.840
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.839
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.833
Pm013209 Prunus mume Pm013209 I 0.828
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.828
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.828
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.820
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.820
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.816
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.816
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.813
MDP0000255104 Malus domestica MDP0000255104 I 0.812
MDP0000281471 Malus domestica MDP0000281471 I 0.812