Bo2g133550 (Brassica oleracea)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bo2g133550 T247977_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G47660
M02266_2.00 		Arabidopsis thaliana
RCGGTAAW
WTTACCGY		 PBM
Weirauch et al.(2014)
pTH7911 		0.903 0.561
AT5G47660
M06980_2.00 		Arabidopsis thaliana
RCRGTWAAAAHDDHW
WDHHDTTTTWACYGY		 Dap-seq
OMalley et al.(2016)
AT5G47660_col_a 		0.903 0.561
AT5G47660
M06981_2.00 		Arabidopsis thaliana
WHHHHRCRGTWAAWW
WWTTWACYGYDDDDW		 Dap-seq
OMalley et al.(2016)
AT5G47660_colamp_a 		0.903 0.561
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g133550.1 MADF 305 373

Links

Other MADF family TFs
Other Brassica oleracea TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra022149 Brassica rapa Bra022149 I 0.964
Bostr.14419s0059 Boechera stricta Bostr.14419s0059 I 0.909
AT5G47660 Arabidopsis thaliana AT5G47660 D 0.903
Carubv10027995m.g Capsella rubella Carubv10027995m.g I 0.899
Cagra.15822s0012 Capsella grandiflora Cagra.15822s0012 I 0.899
Al_scaffold_0008_21 Arabidopsis lyrata Al_scaffold_0008_21 I 0.893
GLYMA15G12591 Glycine max GLYMA15G12591 N 0.884
GLYMA09G01670 Glycine max GLYMA09G01670 N 0.876
Ca_07908 Cicer arietinum Ca_07908 N 0.875
MTR_2g026725 Medicago truncatula MTR_2g026725 I 0.863
Thhalv10000907m.g Eutrema salsugineum Thhalv10000907m.g I 0.862
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.859
Eucgr.D02541 Eucalyptus grandis Eucgr.D02541 I 0.836
VIT_00s0259g00210 Vitis vinifera VIT_00s0259g00210 N 0.835
TCM_030445 Theobroma cacao TCM_030445 N 0.832
MDP0000122269 Malus domestica MDP0000122269 I 0.825
Traes_1DL_772D1D7DF Triticum aestivum Traes_1DL_772D1D7DF I 0.825
Traes_1AL_ED83D13D4 Triticum aestivum Traes_1AL_ED83D13D4 I 0.825
MLOC_14207 Hordeum vulgare MLOC_14207 I 0.825
Pm009623 Prunus mume Pm009623 N 0.823
PRUPE_ppa026454mg Prunus persica PRUPE_ppa026454mg N 0.823
Gorai.010G248600 Gossypium raimondii Gorai.010G248600 N 0.820
VIT_00s0956g00030 Vitis vinifera VIT_00s0956g00030 N 0.820
PGSC0003DMG400013300 Solanum tuberosum PGSC0003DMG400013300 N 0.816